BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312278
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12560.1 | Symbols: ATEXPA7, EXP7, ATEXP7, ATHEXP ALPHA 1.26... 1227 0.0
> AT1G12560.1 | Symbols: ATEXPA7, EXP7, ATEXP7, ATHEXP ALPHA 1.26,
EXPA7 | expansin A7 | chr1:4276519-4277899 FORWARD LENGTH=1033
Length=1033
Score = 1227 bits (664), Expect = 0.0
Identities = 748/789 (95%), Gaps = 4/789 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCCAGTCTCAAGTTCTTGGAG-TTTCAACAAATTCTTCGCTATAGTTTGCGTTGT 59
||||||||| |||||||||||||||| ||| |||||||||||| | ||||||| ||||||
Sbjct 39 ATGGGTCCAATCTCAAGTTCTTGGAGCTTT-AACAAATTCTTCTCAATAGTTTTCGTTGT 97
Query 60 TTTCGCCATATCCGGTGAGTTCGTCGCCGGATACTATCGACCAGGCCCATGGAGATATGC 119
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 98 TTTCGCCATCTCCGGCGAGTTCGTCGCTGGATACTATCGACCAGGCCCATGGAGATATGC 157
Query 120 TCACGCCACTTTCTACGGTGATGAGACCGGTAGTGAAACCATGGGTGGTGCATGTGGGTA 179
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 158 TCACGCCACTTTCTACGGTGACGAGACCGGTGGTGAAACCATGGGTGGTGCATGTGGGTA 217
Query 180 CGGAAACCTTTTTAACAGCGGCTACGGACTGTCCACGGCGGCGCTAAGCACGACATTGTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 CGGAAACCTTTTTAACAGCGGCTACGGACTGTCCACGGCGGCGCTAAGCACGACATTGTT 277
Query 240 CAAAGATGGTTACGGATGTGGCCAATGTTTTCAAATAACATGTTCGAAATCACCTCATTG 299
||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 278 CAATGATGGTTACGGATGCGGCCAATGTTTTCAGATAACATGTTCGAAATCACCGCATTG 337
Query 300 TTACTAC-GGAAAATCAACCGTTGTCACAGCCACCAATCTTTGCCCTCCTAATTGGTACC 358
||||| | ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 338 TTACT-CTGGAAAATCAACAGTGGTCACAGCCACCAATCTTTGCCCTCCTAATTGGTACC 396
Query 359 AAGACTCCAACAATGGTGGTTGGTGCAATCCTCCTAGAACCCATTTCGATATGGCTAAAC 418
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 AAGACTCCAACGCTGGTGGTTGGTGCAATCCTCCTAGAACCCATTTCGATATGGCTAAAC 456
Query 419 CGGCTTTCATGAAACTCGCTAACTGGAAGGCCGGTATCATCCCAGTTGCCTACCGAAGAG 478
| |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||
Sbjct 457 CAGCTTTCATGAAACTCGCTTACTGGAGGGCCGGTATCATCCCAGTTGCATACCGAAGAG 516
Query 479 TGCCATGCCAAAGGAGTGGAGGTATGAGGTTTCAATTCCAAGGTAATTCTTATTGGCTTC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TGCCATGCCAAAGGAGTGGAGGTATGAGGTTTCAATTCCAAGGTAATTCTTATTGGCTTC 576
Query 539 TCGTCTTCGTCATGAACGTTGGTGGCGCCGGAGACATCAAGAGCATGGCCGTGAAAGGTA 598
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 577 TTATCTTCGTCATGAACGTTGGTGGCGCCGGAGACATCAAGAGCATGGCCGTTAAAGGTA 636
Query 599 GCCGCACAAATTGGATAAGTATGAGCCATAACTGGGGAGCCTCTTACCAAGCTTTTTCCT 658
|||| || ||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 637 GCCGGACGAATTGGATAAGCATGAGCCACAATTGGGGAGCCTCTTACCAAGCTTTTTCCT 696
Query 659 CTCTTTACGGTCAATCTCTCTCTTTCCGGGTCACTTCATACACCACCGGTGAAACCGTCT 718
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 697 CTCTCTATGGTCAATCTCTCTCTTTCCGGGTCACTTCTTACACCACCGGTGAAACCATCT 756
Query 719 ATGCTTGGAACGTTGCTCCGGCTAACTGGAACGCCGGTATGACTTACAAGAGCACCGCCA 778
|||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
Sbjct 757 ATGCTTGGAACGTTGCTCCGGCTAACTGGAGCGGCGGTAAGACTTACAAGAGCACCGCTA 816
Query 779 ATTTCCGTT 787
|||||||||
Sbjct 817 ATTTCCGTT 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5