BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312283
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12630.1 | Symbols: | Integrase-type DNA-binding superfamil... 859 0.0
> AT1G12630.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:4298889-4299475 FORWARD LENGTH=587
Length=587
Score = 859 bits (465), Expect = 0.0
Identities = 542/580 (93%), Gaps = 2/580 (0%)
Strand=Plus/Plus
Query 1 ATGAATAATACAATGGCTTCTTCCGGCTTAGGTAGCCGGAGAAAGGATCCGGCGTACAGA 60
||||||| | ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 9 ATGAATAGTTCAATGGCTTCTGCCGGCTTAGGTAGCCGGAGAAAGGATCCGGTGTACAGA 68
Query 61 GGAATCCGGTGCCGAAGTGGTAAATGGGTCTCCGAGATTCGTGAGCCTAAGAAAACCACG 120
|||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||
Sbjct 69 GGAATCCGGTGCCGAAGTGGGAAATGGGTCTCCGAGATTCGTGAGCCGAGGAAAACCACG 128
Query 121 AGAATCTGGCTTGGAACTTACCCCACGGCAGAGATGGCAGCCGCCGCCTACGATGTGGCT 180
||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 129 AGAATCTGGCTTGGAACTTACCCCATGGCAGAGATGGCAGCAGCCGCCTATGATGTGGCT 188
Query 181 GCTCTGGCTCTTAAAGGAAGAGGAGCCGTCTTGAACTTCCCTGGATCCGCCCAGTCATAC 240
||| |||||||||||||||||| ||| |||||||||||||||||||||| | |||||||
Sbjct 189 GCTATGGCTCTTAAAGGAAGAGAAGCTGTCTTGAACTTCCCTGGATCCGTCGGGTCATAC 248
Query 241 CCGGTTCCTGAATCAAAATCGGCAGCGGATATACGAACCGCGGCGGCAGCTGCAGCAGCA 300
|||||||||||||||| ||| ||||| ||||||||| |||| |||||||| |||||||||
Sbjct 249 CCGGTTCCTGAATCAACATCCGCAGCAGATATACGAGCCGCTGCGGCAGCCGCAGCAGCA 308
Query 301 ATGAAGGGATGTGAGGAAGGGGAGGAGGAGAAAGAGGCAACGGAGATGAATAGTAGTAGT 360
||||||||||||||||||||||||||||||||| |||||| ||||| ||| |||||||||
Sbjct 309 ATGAAGGGATGTGAGGAAGGGGAGGAGGAGAAAAAGGCAAAGGAGAAGAAGAGTAGTAGT 368
Query 361 TCGCAGTTGAGAGCGCGTGAGAGCCACGTAAATAATGATG-TGGCTTCTTCGTCATGGTG 419
||| ||| ||||||||||||| |||||||| ||||||||| ||| |||||||| |||||
Sbjct 369 TCGAAGTCGAGAGCGCGTGAGTGCCACGTAGATAATGATGTTGG-ATCTTCGTCGTGGTG 427
Query 420 TGGGACAGAGTTTATGGACGAAGAAGAAGTCTTAAATATGCCTAATCTGCTGGCTAATAT 479
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 428 TGGGACAGAGTTCATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCTGGCTAATAT 487
Query 480 GGCAGAAGGGATGATGGTTGCGCCACCGTCGTGGATGGGTTCTCGGCCGTCGGATGACTC 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 488 GGCAGAAGGGATGATGGTTGCGCCGCCGTCGTGGATGGGTTCTCGGCCGTCGGATGACTC 547
Query 540 TCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTACTGA 579
|||||||||||||||||||||||||||||||||||| |||
Sbjct 548 TCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTATTGA 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5