BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312293
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12740.2 | Symbols: CYP87A2 | cytochrome P450, family 87, su... 2150 0.0
> AT1G12740.2 | Symbols: CYP87A2 | cytochrome P450, family 87,
subfamily A, polypeptide 2 | chr1:4342282-4344857 FORWARD LENGTH=1905
Length=1905
Score = 2150 bits (1164), Expect = 0.0
Identities = 1364/1455 (94%), Gaps = 36/1455 (2%)
Strand=Plus/Plus
Query 1 ATGTGGGCATTGTTCATTTGGGTTACTCTGCTTCTCATAAGTATCACACATTGGGTTTAT 60
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 181 ATGTGGGCATTGCTCATTTGGGTTTCTTTGCTTCTCATAAGTATCACACATTGGGTTTAT 240
Query 61 AGTTGGAGGAACCCTAAATGCAGAGGTAAGCTTCCACCTGGTTCCATGGGTTTCCCGTTA 120
|||||||| || |||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 241 AGTTGGAGAAATCCTAAATGCAGAGGGAAACTTCCACCTGGTTCCATGGGTTTCCCTTTA 300
Query 121 CTCGGCGAGACTATCCAATTCTTCAAGCCAAACAAAACTTCAGACATCCCTCCTTTTATC 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCGGCGAGAGTATCCAATTCTTCAAGCCAAACAAAACTTCAGACATCCCTCCTTTTATC 360
Query 181 AAAGAAAGAGTTAAG-A--A----G-TA--T---GG--T---CCAATTTTCAAGACCAAT 222
||||| ||||||||| | | | || | || | ||||||||||||||||||
Sbjct 361 AAAGAGAGAGTTAAGAATGATGTTGATATGTGCAGGTATGGCCCAATTTTCAAGACCAAT 420
Query 223 CTCGTGGGGAGACCAGTTATTGTATCAACAGATGCTGATTTGAGTTATTTTGTGTTTAAC 282
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTGGTGGGGAGACCAGTTATTGTATCAACAGATGCTGATTTGAGTTATTTTGTGTTTAAC 480
Query 283 CAAGAGGGTCGTTGTTTCCAGAGTTGGTATCCAGACACTTTTACCCACATCTTTGGGGAG 342
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 481 CAAGAGGGACGTTGTTTCCAGAGTTGGTATCCAGACACTTTTACACACATCTTTGGGAAG 540
Query 343 AAGAATGTGGGATCACTACATGGTTTCATGTACAAGTACCTTAAAAACATGGTTTTGACT 402
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGAATGTGGGTTCATTACATGGTTTCATGTACAAGTACCTTAAAAACATGGTTTTGACT 600
Query 403 CTCTTTGGCCATGATGGTCTCAAGAAGATGCTTCCTCAAGTCGAAATGACTGCTAATAAG 462
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 601 CTCTTTGGCCATGATGGTCTCAAGAAGATGCTTCCTCAAGTAGAAATGACTGCCAATAAG 660
Query 463 AGGTTGGAGCTTTGGTCAAATCAGGATTCAGTAGAACTCAAAGATGCAACCGCAAGCATG 522
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 AGGTTGGAGCTTTGGTCAAATCAAGATTCAGTAGAACTCAAAGATGCAACCGCAAGCATG 720
Query 523 ATATTTGATCTCACCGCGAAGAAGTTGATCAGCCATGATCCAGACAAGTCATCAGAGAAT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATATTTGATCTCACCGCGAAGAAGTTGATCAGCCATGATCCAGACAAGTCATCAGAGAAT 780
Query 583 CTAAGGGCAAATTTTGTTGCTTTCATTCAGGGATTAATCTCTTTCCCTTTTGACATCCCA 642
||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 781 CTAAGGGCAAACTTTGTTGCTTTCATACAGGGATTGATCTCTTTCCCTTTTGATATCCCA 840
Query 643 GGAACAGCTTATCACAAATGTCTACAGGGTAGGGAAAAGGCAATGAAAATGTTGAGGAAT 702
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 GGCACAGCTTATCACAAATGTCTACAGGGTAGGGCAAAGGCAATGAAAATGTTGAGGAAT 900
Query 703 ATGCTTCAAGAGAGGCGTAAGAAACCGCGGAAGAACCCAAGTGATTTCTTTGATTATGTT 762
|||||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||
Sbjct 901 ATGCTTCAAGAGAGGCGTGAGAACCCTCGGAAGAATCCAAGTGATTTCTTTGATTATGTT 960
Query 763 ATTGAAGAGATTCAGAAAGAGGGGACAATTCTGACAGAAGAGATTGCACTGGATTTGATG 822
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATTGAAGAGATTCAGAAAGAAGGGACAATTCTGACAGAAGAGATTGCACTGGATTTGATG 1020
Query 823 TTTGTCTTACTATTTGCTAGCTTTGAAACAACATCTCTGGCTATAACTTTAGCCATCAAG 882
|||||||| |||||||| |||||||||||||| ||| ||||| |||||||||| ||||||
Sbjct 1021 TTTGTCTTGCTATTTGCCAGCTTTGAAACAACTTCTTTGGCTCTAACTTTAGCTATCAAG 1080
Query 883 TTTCTCTCAGATGACCCTGCAGTCCTAAAGCGTTTAACGGAAGAACATGAGACAATTCTG 942
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTTCTCTCAGATGACCCTGAAGTCCTAAAGCGTTTAACGGAAGAACATGAGACAATTCTG 1140
Query 943 AGAAACCGGGAAGATGCTGACTCTGGACTTACATGGGAAGAATACAAGTCAATGACTTAC 1002
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGAAACCGGGAAGATGCAGACTCTGGACTTACATGGGAAGAATACAAGTCAATGACTTAC 1200
Query 1003 ACATTTCAGTTCATAAACGAAACAGCGCGACTAGCAAATATAGTTCCTGCAATCTTCAGA 1062
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1201 ACATTTCAGTTCATAAACGAAACCGCGAGACTAGCAAATATAGTTCCTGCAATCTTCAGA 1260
Query 1063 AAGGCGCTGATAGATATAAAATTCAAAGAGTTTGTCAATGATGCAGATTATACAATTCCA 1122
|||||| ||| |||||||||||||||||| || | | | | |||| | | |
Sbjct 1261 AAGGCGTTGAGAGATATAAAATTCAAAGA-TT----A-T-A--C-GATT---C----C-A 1302
Query 1123 GCCGGCTGGGCGGTGATGGTCTGTCCACCAGCTGTACATTTGAATCCAGAAATGTATAAA 1182
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1303 GCCGGCTGGGCGGTGATGGTCTGTCCACCAGCTGTACATTTGAATCCCGAAATGTATAAA 1362
Query 1183 GATCCTTTAGTCTTTAATCCATCAAGATGGGAGGGATCAAAAGTTACTAATGCATCAAAG 1242
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1363 GATCCTTTAGTCTTTAATCCATCAAGATGGGAGGGATCAAAAGTTACAAACGCATCAAAG 1422
Query 1243 CACTTCATGGCCTTTGGTGGCGGTATGAGGTTCTGTGTTGGAACCGACTTCACGAAATTG 1302
||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1423 CACTTCATGGCGTTTGGTGGAGGTATGAGGTTCTGCGTTGGAACCGACTTCACAAAATTG 1482
Query 1303 CAGATGGCTGCGTTTCTTCACAGCTTGGTAACAAAATACAGGTGGGAGGAGATTAAAGGA 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1483 CAGATGGCTGCGTTTCTTCACAGCTTGGTAACAAAATACAGGTGGGAGGAGATAAAAGGA 1542
Query 1363 GGGAATATAGTTCGAACTCCAGGATTACAGTTTCCAAATGGTTACCATGTCAAACTCCAT 1422
||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1543 GGGAATATAACTCGAACGCCTGGATTACAGTTTCCAAATGGTTACCATGTCAAACTCCAT 1602
Query 1423 AAAAAGAGAGACTAG 1437
|| ||||||||||||
Sbjct 1603 AAGAAGAGAGACTAG 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5