BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312350

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31432.1 | Symbols:  | Plant invertase/pectin methylesterase...   660    0.0  


> AT2G31432.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr2:13397597-13398839 FORWARD 
LENGTH=489
Length=489

 Score =  660 bits (357),  Expect = 0.0
 Identities = 449/493 (91%), Gaps = 8/493 (2%)
 Strand=Plus/Plus

Query  1    ATGCCAATCAAAGACGTATACAGTCTTTGCAAGGAATCGTCTGAAGTAGATTTCTGCCTG  60
            ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct  1    ATGCCAACCAAAGACGTATACAGTCTTTGCAAGGAGTCGTCTGAAGTAGATTTCTGCATG  60

Query  61   AAATACATTGGGTCGGACAAACGTATAGTAGCCGCACGCGACTTCTATGACGTATTTTTA  120
            ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  61   AAAAACATTGGGTCGGACAAACGTATAGTAGCCGCACGCGACTTCTATGACATATTTTTA  120

Query  121  ATCGCGATATCTAGGACCCAAATTATAGTGGACACTGGACTCTTGGTTATCAGCGGTGAA  180
            |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  ATCGCGGTATCAAGGACCCAAATTATAGTTGACACTGGACTCTTGGTTATCAGCGGTGAA  180

Query  181  GATACCCGTAAAATTTATAATGGACCATTTGAGAAGAATTTGGTCGTTGTATGTGAGAAA  240
            |||||||||||||  ||||||| ||||||||||||||||| ||||| |||||| ||| ||
Sbjct  181  GATACCCGTAAAAACTATAATGAACCATTTGAGAAGAATTGGGTCGCTGTATGCGAGGAA  240

Query  241  AAATACAAGATCGCGGTCAATAGTTTTCAGAAGGCTCGAGTAGTTGGAGAGAAAAAGTCA  300
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AAATACAAGATCGCGGTTAATAGTTTTCAGAAGGCTCGAGTAGTTGGAGAGAAAAAGTCA  300

Query  301  AAGTCATTAGCGGACCGTACCGAAATGTCCCAACGCACGGAAGCTGGCTTTGAGGCTGTG  360
            ||||||||| |||||||||  ||||||||||||| ||| |||||||||||||||||||||
Sbjct  301  AAGTCATTAACGGACCGTATGGAAATGTCCCAACTCACTGAAGCTGGCTTTGAGGCTGTG  360

Query  361  CTTGATTG-CGAAGACGCATGGACATATGAT-C-AGGAACGTCCACGAGTGTCTCCTGTT  417
            || ||||| | |||||| ||||||| | ||| | || ||| |  || || || |||| ||
Sbjct  361  CTCGATTGTC-AAGACGAATGGACAAA-GATTCTAG-AACATGAACAAGCGTGTCCTTTT  417

Query  418  GT-TTACTATTACCATAAAGTTCGAAAACTAATTAAAATCACTCGTGTTATTATCAAAAG  476
             | |||||  ||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct  418  -TCTTACTGGTACCATAAAGTTCGAAAACTAGTTAAAATTACTCGTGTTATTGTCAAAAG  476

Query  477  GCTTAACGCCTAG  489
            |||||||||||||
Sbjct  477  GCTTAACGCCTAG  489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5