BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312367

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13607.1 | Symbols:  | Defensin-like (DEFL) family protein |...   252    1e-66


> AT1G13607.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:4660778-4661218 FORWARD LENGTH=339
Length=339

 Score =  252 bits (136),  Expect = 1e-66
 Identities = 203/235 (86%), Gaps = 6/235 (3%)
 Strand=Plus/Plus

Query  1    ATGAAGAATCTTCGAATAACCATTATTGCGTTCCTGGCCGTTCTTGTCTTCACCACAACT  60
            ||||| ||| |||||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct  1    ATGAACAATTTTCGAATAACCATTGTTGCGTTCTTAGCCGTTCTTGTCTTCACCACAACT  60

Query  61   GTTACAAATTCTTTGGATGAATCTAAGGTGGACACTATATCCGGATTCATAGAAAACAAT  120
            ||||| ||||||||||||||| ||||  ||||||||||||||  || || |||| |||| 
Sbjct  61   GTTACGAATTCTTTGGATGAACCTAATATGGACACTATATCCAAATCCAGAGAATACAAA  120

Query  121  TGTAAA-TTGGACCAGGGTTGTTTAAACCATATTGCATGTAAGCATTGTTCCTATCGCAA  179
            |||||| ||| ||| || ||||| |||||| |||||||||| ||||||||| ||||||||
Sbjct  121  TGTAAAATTG-ACCTGGATTGTTCAAACCACATTGCATGTAGGCATTGTTCTTATCGCAA  179

Query  180  TTGCAAATGCGATAATGGAACTTGTAAATGC---C-ATGGCTCTAAACCCCCAAG  230
            ||||||||||||| ||||||| |||||||||   | ||| |||| ||||| ||||
Sbjct  180  TTGCAAATGCGATCATGGAACCTGTAAATGCATGCCATGACTCTTAACCCACAAG  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10707030537


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5