BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312374
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13650.2 | Symbols: | BEST Arabidopsis thaliana protein mat... 946 0.0
> AT1G13650.2 | Symbols: | BEST Arabidopsis thaliana protein match
is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4);
Has 3688 Blast hits to 1629 proteins in 255
species: Archae - 22; Bacteria - 222; Metazoa - 684; Fungi
- 292; Plants - 62; Viruses - 14; Other Eukaryotes - 2392 (source:
NCBI BLink). | chr1:4680432-4682097 REVERSE LENGTH=1194
Length=1194
Score = 946 bits (512), Expect = 0.0
Identities = 735/840 (88%), Gaps = 25/840 (3%)
Strand=Plus/Plus
Query 66 GAAACCTTTTGGATCCAAAATCTCAGATTTCAGCGAAATTGAAGAATTTGATCAAGAGAC 125
||||||||| ||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct 236 GAAACCTTTCGGATCCAAAATCTCAGACAACAACGAAATTGAAGAACTTGATCAAGAGAA 295
Query 126 TTTGATTGTGACAAGTCAAGAAGCTAAGGATGATTCCAAAGTGGCACCGAGGGACATAGT 185
|||| |||||||||| ||||||| ||| ||||||||||||||||||||||| || ||||
Sbjct 296 TTTGGTTGTGACAAGACAAGAAGTTAATGATGATTCCAAAGTGGCACCGAGAGATGTAGT 355
Query 186 AGCTACATCAACAAATGTCTCTAAGAAGGCTTTAACCATGGGAGATATTTTATCAATGGA 245
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 356 AGCTACATCAACAAGTGTCTCTAAGAAGGCTTTAACCTTGGGAGATATTTTATCATTGGA 415
Query 246 GGATTCCCAAATACCACCCAACAAAAATAACACTCATGGACCTGAAGAAAACATAGTCCA 305
||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||
Sbjct 416 GGATTCCCAAAGCCCACCCAACAAAAACAACACTAATGGACCTGAAGAAAACATGGTCCA 475
Query 306 TCATGACACACAACTGGAGATAACAGAGGAACCGGAGATAACAGAGGAACCAGAAGCAGA 365
|||| | || | | || | | |||||||||||||||| ||||||||||
Sbjct 476 TCAT-A-AC-C--C--------AC-----ATCTGGAGATAACAGAGGAATCAGAAGCAGA 517
Query 366 CAACTTTTGTGATG---ACAATCTCTTGTCAAGGAATCTCCCAAATGGTTTCAGGGAAAT 422
||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct 518 CAACTCTTGTGATGACAACAATCTCTTGAAAAGGAATCTCCCAAATGGTTTCGGGGAAAT 577
Query 423 AAGTTAT-TGTGAAGCTGAGTCAAGTTTAGCTTATATAACTTACTGTGGACCAAGATCAG 481
||||| | |||||||| |||| ||||||| |||||| ||||||||||||||| ||||
Sbjct 578 AAGTT-TCTGTGAAGCAAAGTCGAGTTTAGATTATATTACTTACTGTGGACCACTCTCAG 636
Query 482 GCTCCGAAAACCTCTCTTTTCGTTCTGATGGAACCAGCGCAAGCTCTTTCGTTTTCCCAA 541
||||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||
Sbjct 637 GCTCCGAAAACCTCTCTATTCGTTCTGATGGAACCAGCGCAAGCTCTTTTGCTCTCCCAA 696
Query 542 TACCGCAATCGGAGTGGAACAGGAGTCCTGTAAGAGTGGGTAAAGCTGAGGAGACACAAC 601
||| |||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||
Sbjct 697 TACTGCAATCGGAGTGGAACAGCAGTCCTGTAAGAATGGGGAAAGCTGAGGAGACGCAAC 756
Query 602 TTCGAATGGTGAAAGCTGAGGAGACAAAACTTC-AAATGGGGAAAGCTGATAGGACACAA 660
|||||||||||| ||||||||||| |||| ||| ||| || |||||||| | |||||||
Sbjct 757 TTCGAATGGTGATAGCTGAGGAGAGAAAAGTTCGAAA-GGATAAAGCTGAGAAGACACAA 815
Query 661 CTTCGAGTGGTGAAAGCTGAGGACACTCAACTCCAAAAGGAGAAAGCTGAGGAGACTCAA 720
|||||| || |||||||||||| | ||||| | | ||| |||||||||||||||||||
Sbjct 816 CTTCGAAAGGAGAAAGCTGAGGAGTCACAACTTCGAGAGGTGAAAGCTGAGGAGACTCAA 875
Query 721 CTTCAAAAGGAGAAAGCTGAGGAGACACAACTTCGAATGGTGATAGCTGAGGAGAGACAA 780
|||| || || ||||||||||||||| |||||||||| || || ||||||||| | ||||
Sbjct 876 CTTCGAATGGTGAAAGCTGAGGAGACTCAACTTCGAAAGGAGAAAGCTGAGGAAACACAA 935
Query 781 CTTCGAAAGGAGAAAGCTGAGGAGAGACAAATTCGAAAGGAGAAAGCTAAGAAGAGACAA 840
||||||| || || |||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 936 CTTCGAATGGTGATAGCTGAGGAGAGACAACTTCGAAAGGAGAAAGATGAGAAGAGACAA 995
Query 841 CTTCGAAAGGAGAAGAAAGGATGGAGACATTACTCCTCTCTTCTCTGTTGTAGATTCTGA 900
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 996 CTTCGAAAGGGGAAGAAAGGATGGAGACATTACTCTTCTCTTCTCTGTTGTAGATTCTGA 1055
Score = 294 bits (159), Expect = 8e-79
Identities = 217/244 (89%), Gaps = 8/244 (3%)
Strand=Plus/Plus
Query 585 AGCTGAGGAGACACAACTTCGAATGG-TGAAAGCTGAGGAGACAAAACTTC-AAATGGGG 642
||||||||||| | || |||||| || | ||||||||| ||||| |||||| ||| || |
Sbjct 770 AGCTGAGGAGAGAAAAGTTCGAAAGGAT-AAAGCTGAGAAGACACAACTTCGAAA-GGAG 827
Query 643 AAAGCTGATAGGA--CACAACTTCGAGTGGTGAAAGCTGAGGACACTCAACTCCAAAAGG 700
||||||| |||| |||||||||||| ||||||||||||||| |||||||| | || ||
Sbjct 828 AAAGCTG--AGGAGTCACAACTTCGAGAGGTGAAAGCTGAGGAGACTCAACTTCGAATGG 885
Query 701 AGAAAGCTGAGGAGACTCAACTTCAAAAGGAGAAAGCTGAGGAGACACAACTTCGAATGG 760
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 886 TGAAAGCTGAGGAGACTCAACTTCGAAAGGAGAAAGCTGAGGAAACACAACTTCGAATGG 945
Query 761 TGATAGCTGAGGAGAGACAACTTCGAAAGGAGAAAGCTGAGGAGAGACAAATTCGAAAGG 820
|||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 946 TGATAGCTGAGGAGAGACAACTTCGAAAGGAGAAAGATGAGAAGAGACAACTTCGAAAGG 1005
Query 821 AGAA 824
|||
Sbjct 1006 GGAA 1009
Score = 156 bits (84), Expect = 4e-37
Identities = 110/123 (89%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 732 GAAAGCTGAGGAGACACAACTTCGAATGGTGATAGCTGAGGAGAGACAACTTCGAAAGGA 791
||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 737 GAAAGCTGAGGAGACGCAACTTCGAATGGTGATAGCTGAGGAGAGAAAAGTTCGAAAGGA 796
Query 792 GAAAGCTGAGGAGAGACAAATTCGAAAGGAGAAAGCTAAGAAGAGACAACTTCGAAAGGA 851
||||||||| ||| |||| ||||||||||||||||| || || |||||||||| |||
Sbjct 797 TAAAGCTGAGAAGACACAACTTCGAAAGGAGAAAGCTGAGGAGTCACAACTTCGAGAGGT 856
Query 852 GAA 854
|||
Sbjct 857 GAA 859
Score = 154 bits (83), Expect = 1e-36
Identities = 135/159 (85%), Gaps = 7/159 (4%)
Strand=Plus/Plus
Query 580 GGT-AAAGCTGAGGAGACACAACTTCGAATGGTGAAAGCTGAGGAGACAAAACTTC-AAA 637
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct 854 GGTGAAAGCTGAGGAGACTCAACTTCGAATGGTGAAAGCTGAGGAGACTCAACTTCGAAA 913
Query 638 TGGGGAAAGCTGATAGGA--CACAACTTCGAGTGGTGAAAGCTGAGGACACTCAACTCCA 695
|| ||||||||| ||| ||||||||||| |||||| ||||||||| | ||||| |
Sbjct 914 -GGAGAAAGCTGA--GGAAACACAACTTCGAATGGTGATAGCTGAGGAGAGACAACTTCG 970
Query 696 AAAGGAGAAAGCTGAGGAGACTCAACTTCAAAAGGAGAA 734
||||||||||| |||| ||| ||||||| ||||| |||
Sbjct 971 AAAGGAGAAAGATGAGAAGAGACAACTTCGAAAGGGGAA 1009
Score = 145 bits (78), Expect = 9e-34
Identities = 129/154 (84%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 702 GAAAGCTGAGGAGACTCAACTTCAAAAGGAGAAAGCTGAGGAGACACAACTTCGAATGG- 760
||||||||||||||| ||||||| || || || ||||||||||| | || |||||| ||
Sbjct 737 GAAAGCTGAGGAGACGCAACTTCGAATGGTGATAGCTGAGGAGAGAAAAGTTCGAAAGGA 796
Query 761 TGATAGCTGAGGAGAGACAACTTCGAAAGGAGAAAGCTGAGGAGAGACAAATTCGAAAGG 820
| | ||||||| ||| |||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 797 T-AAAGCTGAGAAGACACAACTTCGAAAGGAGAAAGCTGAGGAGTCACAACTTCGAGAGG 855
Query 821 AGAAAGCTAAGAAGAGACAACTTCGAAAGGAGAA 854
||||||| || ||| |||||||||| || |||
Sbjct 856 TGAAAGCTGAGGAGACTCAACTTCGAATGGTGAA 889
Score = 73.1 bits (39), Expect = 4e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGCCTACATTTCTGAGGAGAAGTTGTTCTTCAACAAGAAA 45
||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 195 ATGCCTGCATACATTTCTGAGGAGAAGTTGTTCTTCAACAAGAAA 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5