BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312387
Length=1881
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13810.1 | Symbols: | Restriction endonuclease, type II-lik... 1282 0.0
AT1G13820.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 948 0.0
> AT1G13810.1 | Symbols: | Restriction endonuclease, type II-like
superfamily protein | chr1:4734036-4735389 FORWARD LENGTH=1189
Length=1189
Score = 1282 bits (694), Expect = 0.0
Identities = 820/881 (93%), Gaps = 7/881 (1%)
Strand=Plus/Plus
Query 98 GCA-GTGATGATTTAGCTTACTGCCATCGTTTGTTGCACATTCCAAATAACGAACCAGAG 156
||| ||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 80 GCACGTGATGATTTATCTTACTGTCATCGTCTGTTGCACATTCCGTATAACGAACCAGAG 139
Query 157 TCTGACTCAAAGGTAATTTCTGAAATCATTGGTATAGTTTCAAAGAAAGAAGAAGCTGTA 216
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 140 CCTGACTCAAAGGCAATTTCTGAAATCGTTGGTATAGTTTCAAAGAAAGAAGAAGCTGTA 199
Query 217 GTAGTTACGGAATCAACTCAGCATTGGCGTAAGAATTGGCAAGATTTGAGAAAGAATAGG 276
|||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 200 GTAGTTACGGAACCAACTCATCATTGGCGTAAGAATTGGGAAGATTTGAGAAAGAATAGG 259
Query 277 TTAACAGCTAGTAATTTCTCGCGTGCTATCGGATTTTCGCCTGACGGTAGACGAAATCTT 336
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TTAACAGCTAGTAATTTCGCGCGTGCTATCGGATTTTCGCCTGACGGTAGACGAAATCTT 319
Query 337 TGGTTAGAGAAAATTGGGGCAGCAAAACCGTTTGCTGGGAACCGAGCTACGTTTTGGGAT 396
|||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 320 TGGTTAGAGAAAATCGGGGCAGCGAAACCGTTTGCTGGAAACCGAGCTACGTTTTGGGAC 379
Query 397 GTTGAGAATGAGATTGAAGCACTCGAGAGATAC-ACTGAGTTAACGGGAAATGAAATCCT 455
||||||||||| | |||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 380 ATTGAGAATGAGGTCGAAGCACTCGAGAGGTACAAC-GAGTTAACGGGAAATGAAATCCT 438
Query 456 CATACCTGAGTTTGTTGTTTATAAGAATGGTGAAAATCCTGAAGAAAACTGGTTAGGAGC 515
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 439 CATACCTGAGTTTGTTGTTTATAAGAATGGTGAAAGCCCTGAAGAAAACTGGTTAGGAGC 498
Query 516 TTCTCCTGATGGAGTGATTAATGTAGTTAAAGACGGTGTCACTTCGAGGGGTGTGTTAGA 575
|||||||||||||||||| ||||||||||| |||||||| |||||| | |||||||||||
Sbjct 499 TTCTCCTGATGGAGTGATCAATGTAGTTAAGGACGGTGTTACTTCGTGTGGTGTGTTAGA 558
Query 576 AGTGAAATGCCCGTTTAATAATGGGGGTACCTCGCAAA-TGTATCCATGGAAGAAGGTTC 634
|||||||||||||||| |||| ||| || |||| ||| | ||||| |||||||||||||
Sbjct 559 AGTGAAATGCCCGTTTGATAACCGGGATAACTCG-AAAGTTTATCCGTGGAAGAAGGTTC 617
Query 635 CTTATATTTGTGTTCCGCAAGTTCAGGGTTTAATGGAGATTGTGGATACAGATTGGTTGG 694
|||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 618 CTTATAATTGTGTTCCACAACTTCAGGGTTTAATGGAGATTGTGGATACAGATTGGTTGG 677
Query 695 ATTTATATTGTTGGACTCGCAATGGAAGTAGCCTCTTTAGAGTTTGGCGAGATACCGCGT 754
|||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 678 ATTTGTATTGTTGGACTCGCAATGGAAGCAGTCTCTTTAGAGTTTGGCGTGATACCGCGT 737
Query 755 TTTGGGAAGATATGAAACCAGCACTTGTT-GATTTCTGGCAGAAGCATGTTTTACCTGCA 813
||||||| ||||||||||| ||||| ||| ||||| |||||||| |||||||||||||||
Sbjct 738 TTTGGGAGGATATGAAACCGGCACT-GTTTGATTTTTGGCAGAATCATGTTTTACCTGCA 796
Query 814 AGAGAGATATACAATAACGTTGATATAAAGGATCCTCAAGTGAAGCTGAGAGAGTTTATG 873
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 797 AGAGAGATATACAATAACTTTGATATAAAGGATCCTCAAGTGAAGCTGAGAGAGTTTAAA 856
Query 874 CCGAAGCATTGGCATGAAGATTGCAAGAAGATTATGCGTGGAGCTGAAAGAATCAGCGAA 933
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 857 CCGAAGCATTGGCATGAAGATTGCAAGAAGATTATGCGTGGAGCTGAGAGAATCAGCGCA 916
Query 934 AATGCGAACCGTTTGTTCTATGAAATCGACGGGAATCTTGT 974
|| || ||||||||||||||||| ||||| |||||||||||
Sbjct 917 AACGCAAACCGTTTGTTCTATGAGATCGATGGGAATCTTGT 957
> AT1G13820.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:4735547-4737808 FORWARD LENGTH=1286
Length=1286
Score = 948 bits (513), Expect = 0.0
Identities = 567/594 (95%), Gaps = 0/594 (0%)
Strand=Plus/Plus
Query 1288 ttttGGAAGTCTCATATTGAAAGGCCTGTGGTTTTGGTTGGGCCGAGCCTCGGTGCTGCT 1347
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 502 TTTTGGAAGTCTCATATTAAAAGGCCTGTGGTTTTGGTTGGTCCGAGCCTCGGTGCTGCT 561
Query 1348 GTCGCAATTGACATTGCGTTCAACCATCCAGAAGTGGTTGAGTCCTTGGTTTTAATGGAC 1407
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 562 GTCGCAATTGACATTGCGGTCAACCATCCAGAAGCGGTTGAGTCCTTGGTTTTAATGGAC 621
Query 1408 GCAAGCGTTTACTCAGAAGGTACTGGAAACTTGGCAACGTTACCCAAAGCAGCAGCTTAT 1467
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 622 GCAAGCGTTTACGCAGAAGGTACTGGAAACTTGGCAACGTTACCTAAAGCAGCAGCTTAT 681
Query 1468 GCTGGGGTATATCTACTGAAGAGTATTCCATTACGGTTATACGTAAACTTCATTTGTTTC 1527
|||||||| ||||| || |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 682 GCTGGGGTGTATCTTCTAAAGAGTATTCCATTACGGTTATACGTTAACTTCATATGTTTC 741
Query 1528 AATGGTATCTCATTGGAAACTAGTTGGGACTGGACAAAGATTGGTCGCTTGCATTGTCTA 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 AATGGTATCTCATTGGAAACTAGTTGGGACTGGACAAAGATTGGTCGCTTGCATTGTCTA 801
Query 1588 TATCCTTGGTGGGAAGATGCAACTGTTAGTTTCATGACGAGCGGAGGATACAACGTAACT 1647
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 802 TATCCTTGGTGGGAAGATGCAACTGTTAGTTTTATGACTAGCGGAGGATACAACGTAACT 861
Query 1648 TCTCTTATAAAAAAGGTTTCACAGAAGACATTAATACTGTGGGGAGAGGATGACCAAATC 1707
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 862 TCTCTTATAAAAAAGGTTTCACAGAAGACATTGATACTATGGGGAGAGGATGACCAAATC 921
Query 1708 ATTAGCAACAAGCTCGCTTGGAGACTGCATGGAGAGTTATCGAATGCACGTGTGGAACAA 1767
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 922 ATTAGCAACAAGCTCGCTTGGAGACTGCACGGAGAATTATCGAATGCACGTGTCAAACAA 981
Query 1768 ATATCAAACTGTGGACATCTTCCCCACGTCAAAAAACCGGCTGCTGTTGCTAAACTTATC 1827
||||| |||||||||||||||||||| ||| |||| ||||||||||| ||||||||||
Sbjct 982 ATATCTAACTGTGGACATCTTCCCCATGTCGAAAAGCCGGCTGCTGTCACTAAACTTATA 1041
Query 1828 GCAGAGTTTGTTAGAGAGACGTGCCGGTGTAAAGAGGTTGAAAGTATATCTTAG 1881
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1042 GCAGAGTTTGTTAGAGAGACTTGCCGGTGTAAAGAGGTTGAAAGTATATCTTAG 1095
Score = 396 bits (214), Expect = 5e-109
Identities = 293/328 (89%), Gaps = 18/328 (5%)
Strand=Plus/Plus
Query 973 GTGGAATGTACAATGAAAAGGCCGTTTAAAGTAACGGCGGAGAAGTTTCCGACGTTTCTG 1032
|||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 124 GTGGAATGTACAATCAAAAGGACGTTTAAAGTGACGGCGGAGAAGTTTCCGACGTTTCTG 183
Query 1033 CCGAGCGATGTTGAGAGAATCAAAGACACGTTTGCTCTAAAGCTCGCCACCAGAATCGAG 1092
|||| |||||| |||| ||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 184 CCGACCGATGTCGAGAAAATTAAAGACACGTTTGCTCTAAAGCTCGCCGCCAGAATAGAG 243
Query 1093 AGGCTTCCTGTATCTGTGAGCTTCAGGGAAGATAGTATTATGAGTAGTTGCGTGACACCG 1152
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 244 AGGCTTCCTGTATCTGTGAGCTTCAGGGAAGATAGTATTATGAGCAGTTGCGTGACACCG 303
Query 1153 CTAATTCGGAACGGGACAACTCCTGTTGTGCTTCTTCACGGATTTGATAG---------A 1203
|| || ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 304 CTGATGCGGAACGAGACAACTCCTGTTGTGCTTCTTCACGGATTTGATAGTTCTTGTTTA 363
Query 1204 ---T--A----CACTTATCCATTGCTAGAAGAAGCTGGTTTAGAAACGTGGGCATTTGAT 1254
| | ||||||||| ||||| |||||||| ||||||||||| ||||||||||||
Sbjct 364 GAGTGGAGATACACTTATCCGTTGCTTGAAGAAGCCGGTTTAGAAACATGGGCATTTGAT 423
Query 1255 ATCCTTGGTTGGGGTTTTTCTGATTTAG 1282
||||||||||||||||||||||||||||
Sbjct 424 ATCCTTGGTTGGGGTTTTTCTGATTTAG 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93122010975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5