BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312395
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13920.1 | Symbols: | Remorin family protein | chr1:4758188... 1640 0.0
> AT1G13920.1 | Symbols: | Remorin family protein | chr1:4758188-4759754
FORWARD LENGTH=1038
Length=1038
Score = 1640 bits (888), Expect = 0.0
Identities = 990/1040 (95%), Gaps = 4/1040 (0%)
Strand=Plus/Plus
Query 1 ATGGATACCTTGATCAAGCAGACAAGGAGGAAGCATCCAGCTTCCCAGGAAAAAATTAGA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATACCTTAATCAAGCAGACAAGGAGGAAGCATCCAGCTTCCCAGGAAAAAATTAGA 60
Query 61 GAGGTTGGTAGCTCAACTAGAGAGACAAAAGTGCCGGCAAGGAAGTCTGTTTCATTCAAA 120
||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||
Sbjct 61 GAGGTTGGTAGCTCAACTAGAGAGAAAAAAGTGTCAGCAAGGAAGTCTGTTTCATTCAAA 120
Query 121 GAAGATAAGAAGAAGCCCTCAAACTGGTTACAAAAGCAGTTCTCGAGGCAAATGAGCGGC 180
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 121 GAAGATAAGAAGAAGCCTTCAAACTGGTTACAGAAGCAGTTCTCGAGGCAAATGAGTGGC 180
Query 181 CAAAGTTATGA-CCCGATAGGCGAAATGGATCATGCAGCTGCAGTTGCAGCAACTGCTTA 239
||||||||||| ||| || || ||||||||||||||||||||||||||||| ||||| ||
Sbjct 181 CAAAGTTATGATCCC-ATCGGAGAAATGGATCATGCAGCTGCAGTTGCAGCCACTGCCTA 239
Query 240 TGCCATAGCCACTTTTGAAGAAACTTGGCTAGAGAATTATCATAGTGGCCTTGAACTTGG 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TGCCATAGCCACTTTTGAAGAAACTTGGCTAGAGAACTATCATAGTGGCCTTGAACTTGG 299
Query 300 ACCTTCTTCGTCAAGGAGCAAGAACAGAAGTGAAGAACGGTTGCCTTTAGAGGAACCAAG 359
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 300 ACCTTCTTCGTCAAGGAGCAAGAGCAGAAGTGAAGAACTGTTGCCTTTAGAGGAACCAAG 359
Query 360 AAGCTTATCAAGAAGACTCTCAGGACAACTTTCGTTTATAGACTCAGAGACGAAAGATCA 419
|||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 360 AAGCTTATCAAGAAGATTCTCAGGGCAACTTTCGTTTATAGATTCAGAGACGAAAGATCA 419
Query 420 TAAACAACCTACACTAAAGTCCCCAGTGAGAAAGTCATCGTCGGTAAAAAAGACTTTCTC 479
||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 420 TAAACCTCCTACACTAAAGTCCCCAATGAGAAAGTCATCTTCGGTAAAAAAGACTTTCTC 479
Query 480 CATGAACTTGA-GAGGAGATCACACCAAACAGAGTAAAGAGTCAGAGGAGAAACATGAAA 538
||||||||||| | ||||| ||||||||||||| | |||| |||||||||||||||||||
Sbjct 480 CATGAACTTGATG-GGAGACCACACCAAACAGAATCAAGATTCAGAGGAGAAACATGAAA 538
Query 539 GACAAAGAAAACCAGTTTCTGAACCGCAACGGATACAACCACCGCTCAGGACACGATCAG 598
||||||||||||| ||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct 539 GACAAAGAAAACCGGTTTCTGAACCACCACGGATACAACCACCGCTTAGGACACGATCAG 598
Query 599 AACGTCATGCTCCACCGCCACCTCCTCCTCCTCCTCTATCACCTTCGCCTCTGCGGCTTC 658
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 AACCTCGTGCTCCACCGCCACCTCCTCCTCCTCTTCTATCACCTTCGCCTCTGCGGCTTC 658
Query 659 CACCTAGGGAAACCAAAAGGCAGAGTTCTGTGCACACTAGTCGAAAGGATGATTCTACAG 718
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 659 CACCTAGGGAAACCAAAAGGCAGAGTTCTGAGCATACTAGTCGAAAGGATGATTCTACAG 718
Query 719 CTAATACTTGGGAAAAAGCTGAACTAGCTAAGATCAAAGCAAGGTATGAGAAGTTAAACA 778
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 719 CTGATGCTTGGGAAAAAGCTGAACTATCTAAGATCAAAGCAAGGTATGAGAAGTTAAACA 778
Query 779 GAAAGATCGATTTGTGGGAAGCAAAGAAGAGGGAAAAAGCTCGAAGAAAGCTGGACATGT 838
||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||| |
Sbjct 779 GAAAGATAGATTTGTGGGAAGCGAAGAAAAGGGAAAAAGCTCGAAGGAAGCTGGACATAT 838
Query 839 CTGAGCAGAGCGAACTAGAACAGAGGAGGAAGAGAGGTTTGCAGAGATTTAGAGAAGACA 898
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 839 CTGAGCAGAGCGAACTAGAACAGAGGAGAAAGAGAGGTTTGCAGAGATTTAGAGAAGACA 898
Query 899 CGGAATACATTGAACAGATTGCTGCTGGAGCCAGAGCTCAGGCGGAGAAAGACAGACAGA 958
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CAGAATACATTGAACAGATTGCTGCTGGAGCCAGAGCTCAGGCGGAGAAAGACAGACAGA 958
Query 959 GCAAAGAGTTCAAGGTGAAGGAGAAGGCCGGTGTAATCCGTAGTACCGGTAAACTCCCTG 1018
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 959 GCAAAGAGTTCAAGGTGAAGGAGAAGGCCGGTGTTATCCGTAGTACCGGTAAACTCCCTG 1018
Query 1019 GAAAAGCATGCTGTTTCTGA 1038
|||| |||||||||||||||
Sbjct 1019 GAAATGCATGCTGTTTCTGA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5