BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312397
Length=3024
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13940.1 | Symbols: | Plant protein of unknown function (DU... 4621 0.0
> AT1G13940.1 | Symbols: | Plant protein of unknown function (DUF863)
| chr1:4762703-4766749 REVERSE LENGTH=3374
Length=3374
Score = 4621 bits (2502), Expect = 0.0
Identities = 2874/3047 (94%), Gaps = 52/3047 (2%)
Strand=Plus/Plus
Query 1 ATGGGAACAAAGGTGCACTGTGAAAGCTTATTTGGTGGATATCATCACTCTATGAGAGAT 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 357 ATGGGAACAAAGGTGCACTGTGAAAGCTTATTTGGTGGATATCATCATTCTATGGGAGAT 416
Query 61 CTCAACAAAGAATC---TAACGGTTGTAGATGGCCATTGTTCTACGGTGACAATAAAACC 117
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTCAACAAAGAATCTAATAACGGTTGTAGATGGCCATTGTTCTACGGTGACAATAAAACC 476
Query 118 TCTGCATCAAACAACAACGATCAATGCTAC---AATGGGTTCACGTCGCAGACTACATTT 174
|||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 477 TCTGCATC--A-AACAACGATCAATGCTACAATAATGGGTTCACGTCTCAGACTACATTT 533
Query 175 GGGTTTGACAAAGATGTGGTGAGAAGGACAATGCTAGAACACGAAGCTGTTTTTAAGACA 234
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 534 GGGTTTGACAAAGATGTGGTGAGAAGGACAATGCTCGAACACGAAGCTGTTTTTAAGACA 593
Query 235 CAGGTTTTGGAACTTCACCGGGTATACAGGATACAGAAGGATATGATGGATGAACTGAAA 294
|||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||
Sbjct 594 CAGGTTTTGGAACTTCACCGGGTATATAGGACACAGAAGGATATGATGGATGAATTGAAA 653
Query 295 AGGAAACAGTTTAATAAAGAATGGGTTCCGATTGAGGCATCATTTTCATCTCAAGCTACG 354
|||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||
Sbjct 654 AGGAAACAGTTTAATAAAGAATGGGTTCAGATTGAGGCATCACTTTCTTCTCAAGCTACG 713
Query 355 AATGATGATGTCCGTAAATGGAAAATTCCTAGCTTCCCTTTGGCGAACTCGGTTTACGAT 414
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 714 AATGATGATGTTCGTAAATGGAAAATCCCTAGCTTCCCTTTGGCGAACTCGGTTTACGAT 773
Query 415 AGACCATCCATGTCGGTGGTTGAGGATAATGGCCATTCTCCTATGAAAGGAAGCAATTCT 474
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 774 AGACCATCCATGTCGGTTGTTGAGGATAATGGCCATTCTCCCATGAAAGGAAGCAATTCT 833
Query 475 CAAGGGGTTGTTGGTCCAGTTTCATGGCAAAATGGAGCTAGTTCCAAAAATGTTGAAGTT 534
||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 834 CAA---------GGTCCAGTTTCATGGCAAAATGGAGCTAGTTCCAAAAGTGTTGAAGTG 884
Query 535 TCTGAGGTTAGACCGACGAAAATCAGAAGAAAGATGATAGATCTTTGCATTCCAGCTGAT 594
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 885 TCCGAGGTTAGACCGACGAAAATCAGAAGAAAGATGATAGATCTTTGCCTTCCAGCTGAT 944
Query 595 GAGTACATTGATGACAATGAAGAAGTTGTTGAGTTAAAAGATCACAGAGTTTGCAGCT-C 653
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||| | |
Sbjct 945 GAGTACATTGATGACAATGAAGAAGTTGTTGAGTTAAAGGATCACAGGGTCTGCAG-TAC 1003
Query 654 ATTGAGTCAGCTTCCTAATGGAGATGTGAAGACTGAATCTCGCAGAGATGGTATGAGAAT 713
|| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1004 ATCGAGTCAGCTTCCTAATGGAGATGTGAAGACTGAATCTCGCATAGATGGTGTGAGAAT 1063
Query 714 TGGGTATGGGTCGAGTAGAAGCAATGGTTTGGCTGACTTAAATGAACCAGTTGATGCTCA 773
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 TGGCTATGGGTCTAGTAGAAGCAATGGTTTGGCTGACTTAAATGAACCAGTTGATGCTCA 1123
Query 774 AGAAGCAAACGAATTTGCTTATGGCCACTCCCGTGACTTGCGTAATGGCGAGTTTCAAGG 833
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1124 AGAAGCAAACGAATTTGCTTATGGCCACTCCCGTGACTTGCGTAATGGGGAGTTTCAAGG 1183
Query 834 CCATATTCGCGACTACGGAAAATCTCTAAACTCGGGTAGTGTAAGGGAGCATGTTCCTGT 893
||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1184 CCATATTCGTGACTACGGAAAATCTCTAAACTCAGGTAGTGTAAGGGAGCATATTCCTGT 1243
Query 894 TATCCCTCCGCAACCAGATTTGAACGGCAGACCAAAAGTTTGGCCACACCAACCCTTAAG 953
|||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 1244 TATCCCTCTGCAGCCAGATTTGAACGGCAAACCAAAAGTTTGGTCACACCAACCCCTAAG 1303
Query 954 AACTGATCATTATAATGGGAATAGCACACACAAGTCTGCTGCTCCGTTTTTTCAACCGGC 1013
|||||||||||||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 1304 AACTGATCATTATAAT--G----GCACACACAAGTCTGCTGCTCCATTTTTTCAACCGGC 1357
Query 1014 CAAGCCTCTGGATTCATCGTCTCAGCCTATGCAAGTTTTGATGAACAGTTCACAAACAGT 1073
|| || |||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1358 TAAACCACTGGATTCTTTGTCTCAGCCTATGCAAGTTTTGATGAACAGTTCACAAAGAGT 1417
Query 1074 TATGAGTTTACCTAATTCAGGTCCACCAAGTAAGGCAGTCTTTTGGAGAGAAAGAACGTT 1133
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1418 TATGAGTTTACCTAATTCAGGTCCACCAAGTAAGGCAGTCGTCTGGAGAGAAAGAACGTT 1477
Query 1134 TATTGACCTTGAGGCTGATACTGATACCAATAGTAGTCATGAAGCCGTCATTCATCAAAA 1193
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TATTGACCTAGAGGCTGATACTGATACCAATAGTAGTCATGAAGCCGTCATTCATCAAAA 1537
Query 1194 TCACTTGGATTCAAGTTTAGCTTCTCACCAACAGCGCCAGTTGTATCCATATAATCGTCC 1253
||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||
Sbjct 1538 TCACTTGGATTCAAGTTTAACTTCTCACCAACAGCGCCCCTTGTATCCATATATTCGTCC 1597
Query 1254 AGATTCTGCTGTCTCGTGGAACCATTTACACTCTTCTTGGCAAAATCCTAGCTTTGGATT 1313
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1598 AGATTCTGCTGTCTCCTGGAACCATTTGCACTCTTCTTGGCAAAATCCTAGCTTTGGATT 1657
Query 1314 CCCTCAGAAAGTTGCTTCAGCGCAGAGATATCCGGTTCTAAACCTGTCTGACACTCTGAT 1373
||||||||||||||||||||| ||||||||||||||||||||| ||||||| || |||||
Sbjct 1658 CCCTCAGAAAGTTGCTTCAGCTCAGAGATATCCGGTTCTAAACATGTCTGATACACTGAT 1717
Query 1374 TAGTAATGCTCAGAAGCAAGGGTATCTTGGAGACAGACTGCAGTTTGAAAGCAATCCTAG 1433
| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 1718 TGGTAATGCTCAGAAGCAAGGGTATCTTGGAGATAGATTGCAGTTTGAAAGCAATTCTAG 1777
Query 1434 ATTTGACTCGGGGTGCGGGAATTCCAGTCGGTTAAACCAAAACATGTTTTACAATGAGTG 1493
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1778 ATTTGACTCAGGGTGCGGGAATTCCAGTCGGTTAAACCACAATATGTTTTACAATGAGTG 1837
Query 1494 TTCCACTTCATCAAAATCGAAATTTGCTGGGACTGGCTATACTTATCCTAACGGAGGAAG 1553
|||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||
Sbjct 1838 TTCCACTTCATCAAAATCGAAAGTCGCTGGGACTGGCTATAATTATCCTAACGGAGGAAG 1897
Query 1554 AAGTGATTACAGCTCGGAGATGAAGTTTGTGAGAGATTTGAACTTAAATGTGACACTTTC 1613
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1898 AAGTGATTACAGCTCGGAGAGGAAGTTTGTGAGGGATTTGAACTTAAATGTGACACTTTC 1957
Query 1614 AAACACTTCTGTTGTTGAAGTCAGAAAGGATGAAGAACATGTGGCTACTTTACCATGGCT 1673
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1958 AAACACTTCTGTTGTTGAAGTCAGAAAGGATGAAGAACACCTGGCTACTTTACCATGGCT 2017
Query 1674 TAATAAACCCAAGTCTGTTTGTAACTCTGAGATAGCTGATGGGAAATGGAATCTGAAGAG 1733
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 2018 TAATAAACCCAAGTCTGTTTGTAACTCTGAGTTAGCTGATGGGAAATGGAGTCTGAAGAG 2077
Query 1734 TAATGATGCTGTTCTGAGTTCTTCTTTGAAACCATTGGATACT-AAAGATGAGGCAAGAG 1792
|||||||||||||| ||||||||||||||||||||||||| | | |||||||||| |||
Sbjct 2078 TAATGATGCTGTTCCAAGTTCTTCTTTGAAACCATTGGATA-TCAGAGATGAGGCAGGAG 2136
Query 1793 ACAAAGTTCAGAACGA-TATGTGGCTAGAGAGGTTAAAGTCTGGTTCTTGTTCCAATAAT 1851
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 ACAAAGTTCAGAA-TATTATGTGGCTAGAGAGGTTAAAGTCTGGTTCTTGTTCCAATAAT 2195
Query 1852 CCGGAGACTGAGAAGATCAAAGCTAACACA-GAAATTCCTGGATTTGCTTATAAAGATCA 1910
|||| ||||||||||||| | ||||||| | |||||||||||||| ||||||||||||||
Sbjct 2196 CCGGTGACTGAGAAGATCGATGCTAACA-AGGAAATTCCTGGATTGGCTTATAAAGATCA 2254
Query 1911 ATCCAATGCAGAAAAAGGTAAAGTCCATAATGTTAGGATGCTCGACATGAACGAACCTTG 1970
|||||||| ||| ||||||||||||||| | ||||||||||| |||||||||||||| ||
Sbjct 2255 ATCCAATGTAGAGAAAGGTAAAGTCCATTACGTTAGGATGCTAGACATGAACGAACCGTG 2314
Query 1971 TAATCCTCTTTGGGATGAAGATCAGCAAACAGAGGAACAGACTGGGACAAGGGTTTC-GG 2029
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 2315 TGATCCTCTTTGGGATGAAGATCAGCAAACAGAGGAACAGACTGAGACAAGGGTTTCAGC 2374
Query 2030 TAGGTAATAGGTGTCAGATTGATTTGAACATTTTGGGTAGTGATGATGAAGGGGAAAATT 2089
|| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 2375 TA-GTAATAGGTGTCAGATTGATTTGAACATTTTGGGCAGTGATGATGAAGGCGAAAATT 2433
Query 2090 GCTCTGTTCCTGCCAGTTCAAGACTGAATGCAAAGGCCCCTATGATAGATTTAGAAACTA 2149
||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 2434 GCTCTGTTCCTGCCAGTTCAAGACTGAATTCAAAGGCTCCTATGATAGATTTGGAAACTG 2493
Query 2150 TTCCCGAGTCTGATGATGAAGAAGAAGA---TAATATCTCTGGAGAAAAGCCATCAGAAG 2206
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2494 TTCCTGAGTCTGATGATGAAGAAGAAGATGGTAATATCTCTGGAGAAAAGCGATCAGAAG 2553
Query 2207 --AAATCCCATTAGAGGAAAAAACTATCGAGAAACCGCCTGAGTTTGAAAAATTAGCAGC 2264
|||| | ||| |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2554 TAAAAT-CAATT-GAGGAAAAAACTCTAGAGAAACCGCCTGAGTTTGAAAAATTAGCAGC 2611
Query 2265 AGAAACAATAGTTGCCATCTATTCAGCTTGCCTAGATAGAGAGCTTGAAGTTGTTGCTTC 2324
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2612 AGAAACAATAGTTGCCATCTATTCAGCTTGCCTAGATAGAGAGGTTGAAGTTGTTGCTTC 2671
Query 2325 GTCAGAAGTTTCTGAAACCATCATCCTTCACTGGTTTGCAGAAACAGTAAATACTCACAA 2384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2672 GTCAGAAGTTTCTGAAACCATCATCCTTCACTGGTTTGCAGAAACAGTAAATACTCACAA 2731
Query 2385 AGAGAATCTGGACGAAAAGCTCGATACTTTCTCGAGGAATCAA-GGACGTTCTATCGAAG 2443
||||||||||||| |||||||||||||||| || ||||||||| | |||||||||||||
Sbjct 2732 AGAGAATCTGGACAAAAAGCTCGATACTTTTTCAAGGAATCAATCG-CGTTCTATCGAAG 2790
Query 2444 AGATTGATTACTTTGAGTCAATGACCCTGAAACTACCTGAGATCTCAGAAGAAGAGTATA 2503
| ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 2791 ATATTGATTACTTTGAGTCAATGACCCTGCAACTACCTGATATCTCAGAACAAGAGTATA 2850
Query 2504 TGCCTAAGCCATTGGTTCCTGAAGACCTCAAATTGGAGGAAACTTCAGGAACCGCTCTGG 2563
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2851 TGCCTAAGCCATTGGTTCCTGAAAACCTCAAATTGGAGGAAACTACAGGAACCGCTCTGG 2910
Query 2564 TCACAAGCCAAAGACCAAGAAGAGGAAACGCGAGAAAAGGGAAACAGAGACGAGACTTCC 2623
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2911 TCACAAGCCAAAGACCGAGAAGAGGAAACGCGAGAAAAGGGAAACAGAGACGAGACTTCC 2970
Query 2624 AAAGAGACATTCTCCCTGGACTTCTGTCTCTTTCGAAACACGAAGTAACAGAAGACATTC 2683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2971 AAAGAGACATTCTCCCTGGACTTCTGTCTCTTTCGAAACACGAAGTAACAGAAGACATTC 3030
Query 2684 AAATGTTTGATGGGTTCATGAGAGCAGCAGGAAGCTCCTGGACTCCAACCGGTTTAACAA 2743
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 3031 AAATGTTTGATGGGTTCATGAGAGCAACAGGAAGATCTTGGACTCCAACCGGTTTAACAA 3090
Query 2744 GGAAGAAAACCGGTTCAAGAGGAAGACCACGACGAGTCATAACAAACCCTGCTGAACCAG 2803
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 3091 GGAAGAAAACCGGTTCAAGAGGAAGACCACGACGAGCCATAACAATCCCTGCTGAACC-G 3149
Query 2804 TAGTCTATTGCCCGGTACCAGCTCCAGCTCCT-C-CC-CCCTCGGTT---CAACATGTGA 2857
|||||||| ||||| ||||||||||||||| | || ||||| ||| ||||||||||
Sbjct 3150 --GTCTATTGTCCGGTTCCAGCTCCAGCTCCTCCTCCTCCCTCAGTTCAACAACATGTGA 3207
Query 2858 GCAATCAAAGCAACAATGGTGAAACTGAAATGGGTTTAGAAGATAGAAGCTTTGCAGGTT 2917
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3208 GCAATCAAAGCAACAATGGTGAAACTGAAATGTGTTTAGAAGATAGAAGCTTTGCAGGTT 3267
Query 2918 GGGGTAAGATGACAAGAAGGCCTAGAAGACAACGATGTCCTTCAGCTTCAACTACAACTG 2977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3268 GGGGTAAGATGACAAGAAGGCCTAGAAGACAACGATGTCCTTCAGCTTCAACTACAACTG 3327
Query 2978 CAACTACAAGTAACCAACGTTCATCATCACACGCGCCTTTCACGTGA 3024
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3328 CAACTACAAGTAACCAACGTTCATCATCACACGCGCCTTTCACGTGA 3374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150350328171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5