BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312408

Length=936
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14060.1 | Symbols:  | GCK domain-containing protein | chr1:...   693    0.0  


> AT1G14060.1 | Symbols:  | GCK domain-containing protein | chr1:4817144-4818020 
REVERSE LENGTH=877
Length=877

 Score =  693 bits (375),  Expect = 0.0
 Identities = 461/498 (93%), Gaps = 23/498 (5%)
 Strand=Plus/Plus

Query  1    ATGGGAATTACATCATCCACAGATCCAAAAACAGAGACTTTTTCCGACCCCAAATCTCAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  128  ATGGGAATTACATCATCCACAGATCCAAAAACAGAGACTTTTTCCGACCCCAAATCTCAA  187

Query  61   AACAACGAAGAAGCTCCAGCTCCAGCTCCATCTGAGGAACTCGGAGATTCGTCTCCGTCG  120
            ||||||||||||||| |  ||||||||  ||||||| ||||||||||| |||||||||||
Sbjct  188  AACAACGAAGAAGCT-C--CTCCAGCTAAATCTGAGAAACTCGGAGATGCGTCTCCGTCG  244

Query  121  ------G----A---GA--AACTTGGAGATTCATCAACTGTTTGGAGAGATCCAGTAGAT  165
                  |    |   ||  |||| |||||||||||||||||||||||||| |||| ||||
Sbjct  245  ACTCCAGCTCCATCTGAGGAACTCGGAGATTCATCAACTGTTTGGAGAGACCCAGAAGAT  304

Query  166  TCCGAATCGGAT---CAACCACAAGAAGGAGGAGGAGGAGACGCAGATGGTGAAGAAGAA  222
            ||||||||||||    ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct  305  TCCGAATCGGATGAAAAACCAGAAGAAGGAGGAGGAGGAGACGCAGATGGTGAAGAGGAA  364

Query  223  GGAGAGTGTGGGTTTTGCTTGTTTATGAAAGGAGGTGGTTGCAAAGATTCGTTTATTGCT  282
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  365  GGAGAGTGTGGGTTTTGCTTGTTTATGAAAGGAGGTGGTTGCAAAGATTCGTTTGTTGCT  424

Query  283  TGGGAAGAGTGTGTTG-AGAAAGCTGAGAAGAACAAGGAAGATATTGTTACTAATTGTAT  341
            |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||
Sbjct  425  TGGGAAGAGTGTGTTGAAG-CAGCTGAGAAGAACAAGGAAGATATTGTTACTAATTGTAT  483

Query  342  GGAAGTCACTTCGATGTTGAAGAAGTGTATGGATGAACATTCGGATTACTATCAGCCGAT  401
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct  484  GGAAGTCACTTCGATGTTGAAGAAGTGTATGGATGAACATTCCGATTACTATCAGCCCAT  543

Query  402  TCTCGCTGCGgagaaagctgctgaagcagaggttaagaaggagcttgaagctgagaagaa  461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  544  TCTCGCTGCGGAGAAAGCTGCTGAAGCAGAGGTTAAGAAGGAGCTTGAAGCTGAGAAGAA  603

Query  462  gaaggaagaagaagagaa  479
            ||||||||||||||||||
Sbjct  604  GAAGGAAGAAGAAGAGAA  621



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45763307917


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5