BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312416
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14180.1 | Symbols: | RING/U-box superfamily protein | chr1... 1066 0.0
> AT1G14180.1 | Symbols: | RING/U-box superfamily protein | chr1:4847162-4849207
FORWARD LENGTH=1611
Length=1611
Score = 1066 bits (577), Expect = 0.0
Identities = 693/744 (93%), Gaps = 27/744 (4%)
Strand=Plus/Plus
Query 1 ATGGGTTCGCTCTGTTGTGTCGCTGCAAAGTCAGATAGATCAAATTCTGCAAGTGGGGAC 60
|||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||
Sbjct 328 ATGGGTTCGCTCTGTTGTGTAGCTGCGAAGTCAGATAGATCAAATTCTACAAGTGGGGAC 387
Query 61 TTTTCTTTTGGCCCGCATGAGCCTTATTGGAGGACTAATACAAGTTTCTCTCCACCTTCA 120
||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 388 TTTTCATTTGGCCTGCATGAGCCTTATTGGAGGACTAATACAAGTTTCTCTCCTCCTTCA 447
Query 121 TCGAGATGGGACGTCCATGGATTAATGGATGGTATTAGCTGTTATGGATCTTCCACATCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 TCGAGATGGGACGTCCATGGATTAATGGATGGTATTAGCTGTTATGGATCTTCCACATCA 507
Query 181 TCTAATGCTAATGTTCTTCGTAGTCCCGACCTTTCTCAAGCTCTTCATTGGACACCTAAT 240
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TCAAATGCTAATGTTCTTCGTAGTCCCGACCTTTCTCAAGCTCTTCATTGGACACCTAAC 567
Query 241 GATTTTGAATCTGCAACAAGAAGAGATCAGATTGTTAAGCAACTACCAGGTACATCAAGA 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GATTTTGAATCTGCTACAAGAAGAGATCAGATTGTTAAGCAACTACCAGGTACATCAAGA 627
Query 301 AATGTCGGTATTGGGTGTTCTGATATTGGTGACTCTGAACCTGGCCGTAACGT-CTCAAG 359
|||||| | | ||||||||||||||||||||| |||||| | ||||||
Sbjct 628 AATGTC----------G----G-TATTGGTGACTCTGAACCTGGTCGTAAC-TCCTCAAG 671
Query 360 CCGGCGCTTTTTCCTGTCCAAGCCGGTTCATCCTATACTACATCCTTCTGATAATGTTAG 419
||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 672 CCGGCGCTTTTTCTTGTCTAAGCCGGTTCATCCTATACTGCATCCTTCTGATAATGTTAG 731
Query 420 GGATACAACATCTGATTCTACGGATGCCTGCAGTTGGAGCAGTGGGACCGCAAGCAGCAT 479
||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct 732 GGATACAGCATCTGATTCTGCGGATGCCTGCAGTTGGAGCAGCGGGACCCCAAGCAGCAT 791
Query 480 TGATTCTGTGGATGTTCCTGAGCCAGTTCTTGATTGGAATAATAATAACTCCTCTACCAA 539
||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 792 TGATTCTGTGGATGTTCCTGAGCCAGTTCTTGATTGGAATAATAA---CTC-T--ACCAA 845
Query 540 AGCACAACAAGTAGC---TTCAAGTACATTTAAATGCGGATTGTGTAACAGATACCTCTC 596
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 846 AGCACAACAAGTAGCAGCTTCAAGTACATTTAAATGCGGACTGTGTAACAGATACCTCTC 905
Query 597 GCAGAAATCTCCTTGGGGATCTCGGTCCATCCTAAGAAACCGAGACATGCCTGTCACAGG 656
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 906 GCAGAAATCTCCGTGGGGATCTCGGTCCATTGTAAGAAACCGAGACATGCCTGTCACAGG 965
Query 657 AGTGCTTTCATGTCAACACGTCTTTCACGCGGAATGTCTTGACCAATCAACTCCAAAGAC 716
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 966 AGTGCTTTCATGTCAACATGTCTTTCACGTGGAATGTCTTGACCAATCAACTCCAAAGAT 1025
Query 717 TCAACGCAATGACCCACTGT-TCC 739
|||||||||||||||||||| |||
Sbjct 1026 TCAACGCAATGACCCACTGTGTCC 1049
Score = 399 bits (216), Expect = 2e-110
Identities = 263/285 (92%), Gaps = 6/285 (2%)
Strand=Plus/Plus
Query 734 TGTTCCGAGGCTTAAACCGCTTTGTGAAGATGGGCCATCTACAAGACCATGGGGTTGTGC 793
||| ||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||
Sbjct 1095 TGTCCCGAGGCTTAAACCGCTTTATGAAGATGGGCCATCTTCAAGACCATGGGGCTGTGC 1154
Query 794 TCAGGCTGGCTGGTGACTGTGTTGAAAGTGCTGTCAATGTGCCGCAGAAAAACACCATGA 853
|||||| | |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1155 TCAGGC---C-GGTGACTGTGTTGAAAGTGCTGTCAATGTGCCCCCTAAAAACACCATGA 1210
Query 854 TGATGATAAACCGGAGCCAGATAAGGAAGAA-CCTCTCATTGAGAGGAAACTCAAGCAAA 912
||||||||||||||| || ||||||||| || ||||||||||||||||||||||||||||
Sbjct 1211 TGATGATAAACCGGAACCGGATAAGGAA-AAGCCTCTCATTGAGAGGAAACTCAAGCAAA 1269
Query 913 GATTTTCCAAGAAAAATGAAGAGAAGTAACTCAGTTGCCATGGATAATCTCACTAATCAA 972
|||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1270 GATTTTTCAAGAAAAATGAAGAGAAGTAACTCAGTTGCCATGGAAAATCTGGCTAATCAA 1329
Query 973 GTCTCGCTTGTGCGTTCTAGAGGGAAAGAGAAAGCTTCATGGTAG 1017
||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 1330 GTCTCGCTTGTTCATTCTAGAGGGAAAGAGAAAGTTTCATGGTAG 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5