BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg312416 Length=1017 Score E Sequences producing significant alignments: (Bits) Value AT1G14180.1 | Symbols: | RING/U-box superfamily protein | chr1... 1066 0.0 > AT1G14180.1 | Symbols: | RING/U-box superfamily protein | chr1:4847162-4849207 FORWARD LENGTH=1611 Length=1611 Score = 1066 bits (577), Expect = 0.0 Identities = 693/744 (93%), Gaps = 27/744 (4%) Strand=Plus/Plus Query 1 ATGGGTTCGCTCTGTTGTGTCGCTGCAAAGTCAGATAGATCAAATTCTGCAAGTGGGGAC 60 |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| Sbjct 328 ATGGGTTCGCTCTGTTGTGTAGCTGCGAAGTCAGATAGATCAAATTCTACAAGTGGGGAC 387 Query 61 TTTTCTTTTGGCCCGCATGAGCCTTATTGGAGGACTAATACAAGTTTCTCTCCACCTTCA 120 ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 388 TTTTCATTTGGCCTGCATGAGCCTTATTGGAGGACTAATACAAGTTTCTCTCCTCCTTCA 447 Query 121 TCGAGATGGGACGTCCATGGATTAATGGATGGTATTAGCTGTTATGGATCTTCCACATCA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 448 TCGAGATGGGACGTCCATGGATTAATGGATGGTATTAGCTGTTATGGATCTTCCACATCA 507 Query 181 TCTAATGCTAATGTTCTTCGTAGTCCCGACCTTTCTCAAGCTCTTCATTGGACACCTAAT 240 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 508 TCAAATGCTAATGTTCTTCGTAGTCCCGACCTTTCTCAAGCTCTTCATTGGACACCTAAC 567 Query 241 GATTTTGAATCTGCAACAAGAAGAGATCAGATTGTTAAGCAACTACCAGGTACATCAAGA 300 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 568 GATTTTGAATCTGCTACAAGAAGAGATCAGATTGTTAAGCAACTACCAGGTACATCAAGA 627 Query 301 AATGTCGGTATTGGGTGTTCTGATATTGGTGACTCTGAACCTGGCCGTAACGT-CTCAAG 359 |||||| | | ||||||||||||||||||||| |||||| | |||||| Sbjct 628 AATGTC----------G----G-TATTGGTGACTCTGAACCTGGTCGTAAC-TCCTCAAG 671 Query 360 CCGGCGCTTTTTCCTGTCCAAGCCGGTTCATCCTATACTACATCCTTCTGATAATGTTAG 419 ||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 672 CCGGCGCTTTTTCTTGTCTAAGCCGGTTCATCCTATACTGCATCCTTCTGATAATGTTAG 731 Query 420 GGATACAACATCTGATTCTACGGATGCCTGCAGTTGGAGCAGTGGGACCGCAAGCAGCAT 479 ||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct 732 GGATACAGCATCTGATTCTGCGGATGCCTGCAGTTGGAGCAGCGGGACCCCAAGCAGCAT 791 Query 480 TGATTCTGTGGATGTTCCTGAGCCAGTTCTTGATTGGAATAATAATAACTCCTCTACCAA 539 ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 792 TGATTCTGTGGATGTTCCTGAGCCAGTTCTTGATTGGAATAATAA---CTC-T--ACCAA 845 Query 540 AGCACAACAAGTAGC---TTCAAGTACATTTAAATGCGGATTGTGTAACAGATACCTCTC 596 ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 846 AGCACAACAAGTAGCAGCTTCAAGTACATTTAAATGCGGACTGTGTAACAGATACCTCTC 905 Query 597 GCAGAAATCTCCTTGGGGATCTCGGTCCATCCTAAGAAACCGAGACATGCCTGTCACAGG 656 |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 906 GCAGAAATCTCCGTGGGGATCTCGGTCCATTGTAAGAAACCGAGACATGCCTGTCACAGG 965 Query 657 AGTGCTTTCATGTCAACACGTCTTTCACGCGGAATGTCTTGACCAATCAACTCCAAAGAC 716 |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 966 AGTGCTTTCATGTCAACATGTCTTTCACGTGGAATGTCTTGACCAATCAACTCCAAAGAT 1025 Query 717 TCAACGCAATGACCCACTGT-TCC 739 |||||||||||||||||||| ||| Sbjct 1026 TCAACGCAATGACCCACTGTGTCC 1049 Score = 399 bits (216), Expect = 2e-110 Identities = 263/285 (92%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 734 TGTTCCGAGGCTTAAACCGCTTTGTGAAGATGGGCCATCTACAAGACCATGGGGTTGTGC 793 ||| ||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| Sbjct 1095 TGTCCCGAGGCTTAAACCGCTTTATGAAGATGGGCCATCTTCAAGACCATGGGGCTGTGC 1154 Query 794 TCAGGCTGGCTGGTGACTGTGTTGAAAGTGCTGTCAATGTGCCGCAGAAAAACACCATGA 853 |||||| | |||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1155 TCAGGC---C-GGTGACTGTGTTGAAAGTGCTGTCAATGTGCCCCCTAAAAACACCATGA 1210 Query 854 TGATGATAAACCGGAGCCAGATAAGGAAGAA-CCTCTCATTGAGAGGAAACTCAAGCAAA 912 ||||||||||||||| || ||||||||| || |||||||||||||||||||||||||||| Sbjct 1211 TGATGATAAACCGGAACCGGATAAGGAA-AAGCCTCTCATTGAGAGGAAACTCAAGCAAA 1269 Query 913 GATTTTCCAAGAAAAATGAAGAGAAGTAACTCAGTTGCCATGGATAATCTCACTAATCAA 972 |||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1270 GATTTTTCAAGAAAAATGAAGAGAAGTAACTCAGTTGCCATGGAAAATCTGGCTAATCAA 1329 Query 973 GTCTCGCTTGTGCGTTCTAGAGGGAAAGAGAAAGCTTCATGGTAG 1017 ||||||||||| | |||||||||||||||||||| |||||||||| Sbjct 1330 GTCTCGCTTGTTCATTCTAGAGGGAAAGAGAAAGTTTCATGGTAG 1374 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49832273824 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5