BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312421
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14220.1 | Symbols: | Ribonuclease T2 family protein | chr1... 998 0.0
> AT1G14220.1 | Symbols: | Ribonuclease T2 family protein | chr1:4858642-4859601
REVERSE LENGTH=687
Length=687
Score = 998 bits (540), Expect = 0.0
Identities = 640/688 (93%), Gaps = 8/688 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGCAAAAGGTTG-G-T----TTATCCTCAAGCTTCTAATGTTTCAAGGTCTTTTC 54
||||||||||| ||||| | | || |||||||||||||| |||||||||||||||||
Sbjct 1 ATGGGAGCAAAGGGTTGTGTTAACGTTCTCCTCAAGCTTCTAGTGTTTCAAGGTCTTTTC 60
Query 55 GTTTCACGTCCGCAAGAAGACTTTGATTTCTTCTACTTAGTTCTTCAGTGGCCAGGAGCA 114
||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 61 GTTTCACGTCCTCAAGAAGACTTTGATTTCTTCTACTTCGTTCTTCAGTGGCCTGGAGCC 120
Query 115 TATTGTGATACAAAGCGTGCTTGTTGCTATCCAACATCCGGTAAACCTGCGGCAGATTTT 174
||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 121 TATTGCGATACATCGCGTGCTTGTTGCTATCCAACATCCGGTAAACCCGCTGCAGATTTT 180
Query 175 GGTATCCATGGTCTTTGGCCTAATTATAATGGTGGTTCATGGCCATCAAATTGTGATCCC 234
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GGTATCCACGGTCTATGGCCTAATTATAACGGTGGTTCATGGCCATCAAATTGTGATCCC 240
Query 235 GACAGCCAATTTGATAGATCTCAGATATCGGATCTCGTAAGTAGTTTGAAAAAGAATTGG 294
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATAGCCAATTTGATAGATCTCAGATATCGGATCTCGTAAGTAGTTTGAAAAAGAATTGG 300
Query 295 CCAACACTATCGTGTCCGAGCAACGAAGGGTTCAAATTTTGGGAACACGAATGGGAGAAA 354
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CCAACACTATCATGTCCAAGCAACGAAGGGTTCAACTTTTGGGAACACGAATGGGAGAAA 360
Query 355 CACGGCACATGCTCCGAATCCGTAATGGACCAACATGACTACTTTGAAAATGCTCTTAAA 414
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 CACGGTACATGCTCCGAATCCGTAATGGACCAACATGAGTACTTTGAAAATGCTCTTAAA 420
Query 415 CTGAAAGAAAAAGCCAATCTCCTTCAAATACTCACAAACTCCGGAATTAACCCGGATGAT 474
|| ||| ||||||| |||||||| ||||| |||| ||||||||||||||| |||||||||
Sbjct 421 CTCAAACAAAAAGCAAATCTCCTCCAAATCCTCAAAAACTCCGGAATTAATCCGGATGAT 480
Query 475 GGATTCTACAGTCTG-ACAAAGATCACCAATGCGATAAAAAATGGGATTGGATTTACACC 533
|||||||||| |||| | || ||||||||| ||||||||| |||| ||||||||||| ||
Sbjct 481 GGATTCTACAATCTGGATAA-GATCACCAACGCGATAAAAGATGGAATTGGATTTACGCC 539
Query 534 AGGAATCGAATGTAACAAAGATCCGGAGCGAAATGACCAGCTTCATCAGATCTATATTTG 593
|||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 540 AGGAATAGAATGTAACAAAGATCCGGAGCGTAATGCCCAGCTTCATCAGATCTATATTTG 599
Query 594 TGTTGATACATCAGGAACTGAGTTTATCGAATGTCCAGTTTTGCCTAGAGGAAGATGTCC 653
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 TGTTGATACGTCAGGAACTGAGTTTATCGAATGTCCAGTTTTGCCTAGAGGAAGCTGTCC 659
Query 654 ATCTCAACTCCAGTTTTCTAAGTTCTAA 681
||||||| ||||||||||||||||||||
Sbjct 660 ATCTCAAATCCAGTTTTCTAAGTTCTAA 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5