BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312429
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14310.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1253 0.0
> AT1G14310.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:4885044-4886793 FORWARD LENGTH=891
Length=891
Score = 1253 bits (678), Expect = 0.0
Identities = 737/766 (96%), Gaps = 2/766 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGCTTGTTTGAGATGTTCACGAGGAAGCTATCTAATTGAAGCCTTGAGACCACTC 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 6 ATGGAAGCTTGTTTGAGATGTTCACGAGGAAGCTATCTAATTGAAGCCATGAGACCACTC 65
Query 61 TCCAGCTCTCTCCGGTCTTCTTCTTCTGTCTCTTTCAGCACCGGCAAGCCGATAAAGAGG 120
||||||||||||||| ||||||||||||||||||| |||||||||||||| || |||||
Sbjct 66 TCCAGCTCTCTCCGGCCTTCTTCTTCTGTCTCTTTTAGCACCGGCAAGCCAATCAAGAGA 125
Query 121 GCTTATGATGGATTGTTGCTTGATGCTGGAGGAACTCTTTTGCAATTGTCGAAACCTGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 GCTTATGATGGATTGTTGCTTGATGCTGGAGGAACTCTTTTGCAATTGTCGAAACCTGTT 185
Query 181 CATGAAACCTACGCTTCCTTGGGCCAGAAATATGGTCTCAAGACAACTCCAGCTGAGATC 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 186 CATGAAACCTACGCTTCCTTGGGCCAAAAATATGGTCTCAAGACAACTCCAGCTGAGATC 245
Query 241 AAGCAAGGTTTCAAGAGAGCTTTTTCTGCTCCTTGGCCTGACAAGTTGCGTTACCAGGGA 300
||| ||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 246 AAGGAAGGTTTCAAGAGAGTTTTTTCTGCCCCTTGGCCTGAGAAGTTACGTTACCAGGGA 305
Query 301 GATGGAAGACCGTTTTGGAAGCTCGTTGTTTCGGAAGCTACTGGTTGTTCTGATAATGAC 360
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 306 GATGGAAGACCATTCTGGAAGCTTGTTGTTTCGGAAGCTACTGGTTGTTCTGATAATGAC 365
Query 361 TACTTCGAAGAAGTCTACCAATATT-TCGCGAATGGCGAGGCGTGGCATCTCCCAGAAGG 419
||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 366 TACTTCGAAGACGTCTACCAATATTAT-GCGAATGGCGAGGCATGGCATCTCCCAGAAGG 424
Query 420 AGCTTATGAGACAATGTCACTACTGAAAGATGCTGGAGTTAAGATGGCTGTTGTGTCTAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 AGCTTATGAGACAATGTCACTACTGAAAGATGCTGGAGTTAAGATGGCTGTTGTGTCTAA 484
Query 480 TTTCGATACCCGGCTAAGAAAGCTATTGAAGGATCTTAATGTCATAGATATGTTTGATGC 539
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 485 TTTCGATACCAGGCTAAGAAAGCTATTGAAGGATCTTAATGTCATAGATATGTTCGATGC 544
Query 540 TGTGATTGTATCCGCAGAAGTCGGATACGAGAAGCCTGATGAACGAATCTTCAAATCTGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGTGATTGTATCCGCAGAAGTCGGATACGAGAAGCCTGATGAACGAATCTTCAAATCTGC 604
Query 600 ATTAGAACAAATCAGCGTAGAAGTAAACAGAGCTGTGCATGTCGGAGATGATGAAGGAGC 659
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 605 GTTAGAACAAATCAGCGTAGATGTAAACAGAGCAGTGCATGTCGGAGATGATGAAGGAGC 664
Query 660 AGATAAAGGCGGAGCAAACGCCATGGGTATTGCTTGTTGGTTGTGGGGAAAAGATGTGCA 719
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 665 TGATAAAGGCGGAGCAAACGCCATCGGTATTGCTTGTTGGTTGTGGGGAGAAGATGTGCA 724
Query 720 GACATTTTCAGACATACAAGAGCGGATCTTGGTTTCAGAACTCTAA 765
||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 725 GACATTTTCGGACATACAAAAGCGGATCTTGGTTTCAGAACTCTAA 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5