BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312432
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14340.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1083 0.0
AT1G14345.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 878 0.0
> AT1G14340.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:4897346-4898961 FORWARD LENGTH=1039
Length=1039
Score = 1083 bits (586), Expect = 0.0
Identities = 671/713 (94%), Gaps = 2/713 (0%)
Strand=Plus/Plus
Query 1 ATGGATCATCAATATGGATATGGTGTTGAAGTTACTGGGTTATCTCCATCTGTTACTCAG 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATGGATCATCAATTTGGATATGGTGTTGAAGTTACTGGGTTATCTCCATCTGTTACTCAT 179
Query 61 AAAGATCTTATCGATTTCTTCTCTTTCTCTGGTGCAATCGAAGATATTGATATTGTCAGG 120
|| |||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 180 AATGATCTTATCGATTTCTTCTCTTTCTCTGGTACTATCCAAGATATTGATATTGTCAGG 239
Query 121 TCGGGTGAGCAAGCTTGCACTGCTTATGTGATGTTCAAGGATTCTTATTCTCAAGAAACT 180
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 TCGGGTGAGCAAGCTTGTACTGCTTATGTGATGTTTAAGGATTCTTATTCTCAAGAAACT 299
Query 181 GCTGTTTTACTCAGTGGCGCAACCATATTGGATCAGCGTGTTTGTATAACTCGTTGGGGA 240
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTGTTTTACTCACTGGCGCAACGATATTGGATCAGCGTGTTTGTATAACTCGTTGGGGA 359
Query 241 CAGCATCACGAAGAGTTCGATTTCTGGAATGCGACTTCGCAAGGTTTTGAAGATGAATCT 300
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 CAACATCACGAAGAGTTCGATTTCTGGAATGCGACTTCGCGAGGTTTTGAAGATGAATCG 419
Query 301 AACTCACATCCTTATGCTCAACGAGGCGAGTTCAACGCTGGGGAAGCAGTGACAAAAGCT 360
||||||| | ||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 420 GACTCACAACATTATGCTCAACGAAGCGAGTTCAACGCTGGAGAAGCAGTGACAAAAGCT 479
Query 361 CAAGAAGTGGTGAAAACAATGCTTGCCACAGGTTTCGTGCTAGGCAAAGACGCTTTAAGC 420
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 CAAGAAGTGGTGAAAATAATGCTTGCCACAGGATTCGTGCTAGGCAAAGACGCTTTAAGC 539
Query 421 AAAGCTAAAGCCTTTGATGAATCTCACGGAGTATCAGCTGCGGCTGTAGCTAGAGTATCC 480
||||||||||||||||||||||| ||||| ||||||||||| || || |||||||||||
Sbjct 540 AAAGCTAAAGCCTTTGATGAATCCCACGGCGTATCAGCTGCAGCGGTGGCTAGAGTATCT 599
Query 481 CAATTAGAGCAGAGGATTGGTCTCACTGACAAAATCTTTACCGGACTTGAAGCTGTCCGA 540
||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 600 CAACTAGAACAGAGGATTGGTCTTACTGACAAAATCTTTACCGGACTTGAAGCTGTTAGA 659
Query 541 ATGACTGACCAAAGGTACCATGTTTCAGACACGGCTAAATCAGCCGTCTTTGCTACAGGA 600
||||||||||||||||| ||||||||||| || ||||||||||| |||||||| ||||||
Sbjct 660 ATGACTGACCAAAGGTATCATGTTTCAGATACAGCTAAATCAGCTGTCTTTGCCACAGGA 719
Query 601 AGAACCGCAGCAGCAGCTGCAACTAGTGTTGTCAATAGCAGTTACTTCTCCAGCGGAGCT 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGAACCGCGGCAGCAGCTGCAACTAGTGTTGTCAATAGCAGTTACTTCTCCAGCGGAGCT 779
Query 661 CTTTGGCTGTCCGGTGCGTTAGA-ACGAGCTGCTAAAGCTGCATCTGATCTCG 712
||||||||||| ||||| ||||| | ||||||||||||| |||||||||||||
Sbjct 780 CTTTGGCTGTCTGGTGCATTAGAGA-GAGCTGCTAAAGCCGCATCTGATCTCG 831
> AT1G14345.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:4899145-4899979 FORWARD LENGTH=835
Length=835
Score = 878 bits (475), Expect = 0.0
Identities = 548/584 (94%), Gaps = 2/584 (0%)
Strand=Plus/Plus
Query 714 TTCTTCCTCCCTTCCGCCGTCAACCGCCGCAACCTCCGTCGTTCGCAAATCCCTCCTCCT 773
||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 40 TTCTTCCTCAATTCCGCCGTCAACCGCCGTAACCTCCGTCGTTCGCAAATCTCTCCTCCT 99
Query 774 CTCAACAACCTTCTCCTTCCCCGCTTCTTCACTACCTCCTTCCACCAAATC-ACCACAAA 832
|||||| |||||||||||||||||||||||| | |||| ||||| ||| | ||||||||
Sbjct 100 CTCAACCACCTTCTCCTTCCCCGCTTCTTCATTGTCTCCCTCCACGAAA-CTACCACAAA 158
Query 833 GACACATTCAAAGATTGCTCCTAGCTTCCTCATCCGCCTCAGCATCCACCGTTCCTTCCG 892
||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 159 GACACATTCAAAGATTGCTCCTAGCTTCCTCCTCCGCATCCGCATCCACCGTTCCTTCCG 218
Query 893 ATTCCAAACCGGCGAAAAAAGAAACAGTCTACTTCGACGGCGGAGCTCATTACGGAGATC 952
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 ATTCCAAACCGGCGAAGAAAGAAACAGTCTACTTCGACGGCGGAGCTCATTACGGAGATC 278
Query 953 TATTAGCCAATCTCATCCTAGGTCTAACCATCCTTTGGCTCCCACTAACCTTAGCCGCCG 1012
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 279 TATTAGCCAATCTCATTCTAGGTCTAACCATCCTTTGGCTCCCACTAACCTTAGCTGCAG 338
Query 1013 TATCCCGAGCCTTTAACCTCCGTTACAGGTTCACAAACCTCCGCGTGACGGTGATTTCGG 1072
| || ||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 339 TGTCTCGAGCTTTTAACCTTCGTTACAGGTTCACTAACCTCCGCGTGACGGTTATTTCGG 398
Query 1073 GACTCACCGGAGAAGACCGGAGCGACTTCTCGTACAAAGTGATTAAAGACGTTCAAGTTG 1132
||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 399 GACTCACCGGAGATGATCGGAGCGATTTCTCGTACAAAGTGATAAAAGACGTTCAAGTTG 458
Query 1133 TGCCGAGGTTCATCGGAGAATGGGGAGACATCATCATCACTTTGAAAGATGGGACAAAAG 1192
|||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||
Sbjct 459 TGCCGAGGTTCATCGGAGAATGGGGAGATATCATCATTACTTTGAAAGATGGAACTAAAG 518
Query 1193 TGGATTTGAGAAGTGTTCCTAAGTTCAGAGAGATTGCTAAATATTGTTTATCTATGGCTG 1252
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 519 TGGATTTGAGAAGTGTCCCTAAGTTCAGAGAGATTGCTAAGTACTGTTTATCTATGGCTG 578
Query 1253 ATCAACCTGCTGTTTTGAAAGAATCTGGTGCTAAAGGCTTTTGA 1296
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 ATCAACCTGCTGTTTTGAAAGAATCTGGTGCTAAAGGCTTTTGA 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5