BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312456
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14580.1 | Symbols: | C2H2-like zinc finger protein | chr1:... 1195 0.0
AT2G02070.1 | Symbols: AtIDD5, IDD5 | indeterminate(ID)-domain ... 436 2e-121
AT2G02080.1 | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain ... 412 4e-114
AT3G50700.1 | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain ... 215 1e-54
> AT1G14580.1 | Symbols: | C2H2-like zinc finger protein | chr1:4989563-4992732
FORWARD LENGTH=1950
Length=1950
Score = 1195 bits (647), Expect = 0.0
Identities = 771/829 (93%), Gaps = 16/829 (2%)
Strand=Plus/Plus
Query 669 TCTAGGGAGAGACAGTTACATTACGCACCGGGCATTCTGTGATGCACTAATACAGGAGTC 728
|||| |||||||||||||||| || ||| ||||||||||||||||||| |||||||||||
Sbjct 836 TCTA-GGAGAGACAGTTACATCACCCACAGGGCATTCTGTGATGCACTCATACAGGAGTC 894
Query 729 AGCAAGAAACCCTACCGTGAGCTTCACGGCAATGGCAGCTGCTGGTGGTGGCGGTGCCAG 788
|||||||||||| |||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 895 AGCAAGAAACCCCACCGTGAGCTTCACGGCAATGGCAGCTGGTGGTGGTGGTGGCGCCAG 954
Query 789 GCATGGCTTTTACGGCGGAGCTTCTTCTGCTCACTCTCACAACCTTTTCGGCAACAATTC 848
|||||||||||||||||||||||||| |||| ||||||||||| |||||| |||||| |
Sbjct 955 ACATGGCTTTTACGGCGGAGCTTCTTCCGCTCTCTCTCACAACCATTTCGGTAACAATCC 1014
Query 849 AAACTCCGGTTTTACCCCTCTA---GCTGCAGGTTACAATCTGAACCGTTCATCTTCCGA 905
||| |||||||| ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1015 AAATTCCGGTTTCACCCCTCTAGCTGCTGCAGGCTACAATCTGAACCGTTCATCTTCCGA 1074
Query 906 CAAGTTCGAAGACTTCGTTCCTCAGTCCACAAACCCTAATCCCGGTCCGACCAACTTCCT 965
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1075 CAAGTTCGAAGACTTCGTTCCTCAGGCCACCAACCCTAATCCCGGTCCGACCAACTTCCT 1134
Query 966 CATGCAATGCTCTCCGAACCAAGGACTGTTAGCCCAGAACAATCAGAGTCTCATGAACCA 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CATGCAATGCTCTCCGAACCAAGGACTGTTAGCCCAGAACAATCAGAGTCTCATGAACCA 1194
Query 1026 GCACGGTCTGATCAGCCTCGGTGATAACA-C--CAAC--C-ACAACTTGTTCAACATCGG 1079
|| ||||||||||||||||||||||||| | |||| | ||||||| |||||| |||
Sbjct 1195 TCATGGTCTGATCAGCCTCGGTGATAACAACAACAACAACCACAACTTTTTCAACCTCGC 1254
Query 1080 ATACTTTCAAGACACCAAGAACTCTGATCAGATAGGTGTTCCTTCTCTTTTCACCAATGG 1139
||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||
Sbjct 1255 ATACTTTCAAGACACCAAGAATTCTGATCAGACAGGTGTTCCTTCTCTGTTCACCAATGG 1314
Query 1140 TGCTGATAACAACGACCCATCTGCTTTCCTTAGAGGGTTAACTTCTTCATCTTC-TCCAA 1198
|||||||||||||| |||||||||||| ||||||||| |||||||||||||||| || ||
Sbjct 1315 TGCTGATAACAACGGCCCATCTGCTTTGCTTAGAGGGCTAACTTCTTCATCTTCGTC-AA 1373
Query 1199 ATGTGGTCGTTAATGACTTTGGAGATAGTGATAATGGAAACCTTCAAGGTCTGATGAACT 1258
||||||||||||||||||||||||| ||||| |||||||||||||||| || |||||||
Sbjct 1374 GTGTGGTCGTTAATGACTTTGGAGATTGTGATCATGGAAACCTTCAAGGACTCATGAACT 1433
Query 1259 CTCTAGCTGCGACAACAGATCAACAAGGCCGG-CCCACTAGCCTTCTCGACCTTCATTTC 1317
|||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 1434 CTCTAGCTGCGACAACAGATCAACAAGGCCGGTCCC-CTAGCCTTTTCGACCTTCATTTC 1492
Query 1318 GGAAACAATCTTAGCATGGGAGG-TGCGGATAGGTTGACTTTGGACTTTCTTGGTGTTAA 1376
| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 1493 GCAAACAATCTTAGCATGGGTGGCT-CGGATAGGTTGACTTTGGACTTTCTTGGTGTTAA 1551
Query 1377 TGGAGGAATTGTGAGCACCGTCAATGGTCGTGGTGGTCGTGGTGGTGGACCTCCTCTGGA 1436
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1552 TGGAGGAATTGTGAGCACCGTCAATGGCCGTGGTGGTCGTAGTGGTGGACCTCCTCTGGA 1611
Query 1437 CGCTGAGATGAAGTTTTCACACCCAAATCATCCATTTGGCAAAGCTTGA 1485
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1612 TGCTGAGATGAAGTTTTCACACCCAAATCATCCATATGGCAAAGCTTGA 1660
Score = 586 bits (317), Expect = 2e-166
Identities = 338/348 (97%), Gaps = 1/348 (0%)
Strand=Plus/Plus
Query 190 TTCCTATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAACAGAATCTGCAGCTTCACAGG 249
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 500 TTCCTATGTGAAGTGTGCAACAAAGGGTTCCAGAGGGAACAGAATCTGCAGCTCCACAGG 559
Query 250 AGGGGACACAACCTTCCATGGAAGCTGAAACAAAAGTCCAACAAAGAAGTGAGGAGGAAG 309
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 560 AGGGGACACAACCTTCCATGGAAGCTGAAACAAAAGTCCAACAAAGAGGTGAGGAGGAAG 619
Query 310 GTGTACCTTTGCCCGGAGGCCTCGTGCGTCCACCATGACCCGGCACGTGCTCTCGGAGAC 369
||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 620 GTGTACCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACCCCGCACGTGCTCTCGGAGAC 679
Query 370 CTCACCGGAATCAAGAAGCATTACTATCGGAAGCACGGTGAGAAGAAGTGGAAGTGCGAT 429
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 680 CTCACCGGAATCAAGAAGCATTACTATCGGAAGCACGGTGAGAAAAAGTGGAAGTGCGAT 739
Query 430 AAATGCTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAGCTCACTCTAAGACCTGTGGT 489
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 AAGTGCTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAGCTCACTCTAAGACCTGTGGT 799
Query 490 ACCAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAGTGAAAGA 537
||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 800 ACCAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAG-GAGAGA 846
Score = 248 bits (134), Expect = 1e-64
Identities = 170/187 (91%), Gaps = 3/187 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTCATCGTACAACACAATTGCTTCATCCTCCGCTCAGACCTTCCTCCTCTCAGGT 60
|||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| ||
Sbjct 257 ATGTCTTCATCGTACAACACAATTGCTTTGTCCTCCACTCCGACCTTCCTCCTCTCAAGT 316
Query 61 GCCGCTTCCGGAGCCAGACCAAACAACTTTAACCGTGAAGAGGCTGCGAGGACCATGATT 120
|||||| ||||| || |||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 317 GCCGCTGCCGGACCCGGACCAAACAACTTTAACCGTCAAGAGGCTGCGATGACCATGGTT 376
Query 121 CAACAAC--CCAACT-CCTCCGTTACTCCACCACCCAAGAAGCGTAGGAACCAACCCGGA 177
||||||| || ||| |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 377 CAACAACAACCCACTTCCTCCGTTGCTCCACCACCCAAGAAGCGAAGGAACCAACCCGGA 436
Query 178 AACCCAA 184
|||||||
Sbjct 437 AACCCAA 443
> AT2G02070.1 | Symbols: AtIDD5, IDD5 | indeterminate(ID)-domain
5 | chr2:505487-509425 FORWARD LENGTH=2116
Length=2116
Score = 436 bits (236), Expect = 2e-121
Identities = 312/349 (89%), Gaps = 4/349 (1%)
Strand=Plus/Plus
Query 182 CAAGCAAATTCCTATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAACAGAATCTGCAGC 241
||| || |||| |||||||||| |||||||||||||| ||||| ||||||||||| || |
Sbjct 269 CAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAGAATCTACAAC 328
Query 242 TTCACAGGAGGGGACACAACCTTCCATGGAAGCTGAAACA-AAAGTCCAACAAAGAAGTG 300
||||| | || |||||||| |||||||||||||| ||||| ||| || | ||||||||||
Sbjct 329 TTCACCGAAGAGGACACAATCTTCCATGGAAGCTCAAACAGAAA-TCGACCAAAGAAGTG 387
Query 301 AGGAGGAAGGTGTACCTTTGCCCGGAGGCCTCGTGCGTCCACCATGACCCGGCACGTGCT 360
| ||| || ||||| ||||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct 388 AAGAGAAAAGTGTATCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACCCGTCACGTGCT 447
Query 361 CTCGGAGACCTCACCGGAATCAAGAAGCATTACTATCGGAAGCACGGTGAGAAGAAGTGG 420
|||||||||||||||||||||||||| ||||| || || || |||||||| |||||||||
Sbjct 448 CTCGGAGACCTCACCGGAATCAAGAAACATTATTACCGTAAACACGGTGAAAAGAAGTGG 507
Query 421 AAGTGCGATAAATGCTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAGCTCACTCTAAG 480
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 508 AAATGCGATAAATGCTCTAAGCGTTACGCTGTTCAATCGGATTGGAAAGCTCACTCCAAG 567
Query 481 ACCTGTGGTACCAAAGAGTATCGATGTGACTGTGGTAC-CATCTTCTCT 528
|| |||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 568 ACTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTACAC-TCTTCTCT 615
> AT2G02080.1 | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain
4 | chr2:518159-521707 REVERSE LENGTH=1844
Length=1844
Score = 412 bits (223), Expect = 4e-114
Identities = 309/351 (88%), Gaps = 4/351 (1%)
Strand=Plus/Plus
Query 182 CAAGCAAATTCCTATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAACAGAATCTGCAGC 241
||| || |||| |||| || || || ||||||||||| ||||| ||||| ||||| ||||
Sbjct 363 CAAACAGATTCATATGCGATGTATGTAACAAAGGGTTTCAAAGAGAACAAAATCTACAGC 422
Query 242 TTCACAGGAGGGGACACAACCTTCCATGGAAGCTGAAACAAAAGTCCAA-CAAAGAAGTG 300
||||| | || |||||||| || |||||||||||||||||||| | ||| ||||||||||
Sbjct 423 TTCACCGAAGAGGACACAATCTCCCATGGAAGCTGAAACAAAAAT-CAACCAAAGAAGTG 481
Query 301 AGGAGGAAGGTGTACCTTTGCCCGGAGGCC-TCGTGCGTCCACCATGACCCGGCACGTGC 359
| |||||| ||||| ||||| ||||| ||| ||||||| |||||||||||| |||||||
Sbjct 482 AAGAGGAAAGTGTATCTTTGTCCGGA-GCCAACGTGCGTTCACCATGACCCGTCACGTGC 540
Query 360 TCTCGGAGACCTCACCGGAATCAAGAAGCATTACTATCGGAAGCACGGTGAGAAGAAGTG 419
||||||||||||||||||||||||||||||||| || || || || || || ||||||||
Sbjct 541 TCTCGGAGACCTCACCGGAATCAAGAAGCATTATTACCGTAAACATGGCGAAAAGAAGTG 600
Query 420 GAAGTGCGATAAATGCTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAGCTCACTCTAA 479
||| || || ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 GAAATGTGAGAAATGTTCTAAGCGTTACGCTGTTCAATCAGATTGGAAAGCTCACTCTAA 660
Query 480 GACCTGTGGTACCAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAG 530
||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 661 GACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAG 711
> AT3G50700.1 | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain
2 | chr3:18840411-18842950 FORWARD LENGTH=2014
Length=2014
Score = 215 bits (116), Expect = 1e-54
Identities = 259/328 (79%), Gaps = 10/328 (3%)
Strand=Plus/Plus
Query 196 TGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAACAGAATCTGCAGCTTCA-CAGGAGGGG 254
|||||| | || ||||||||||| ||||| || |||||||| || ||||| | | | ||
Sbjct 727 TGTGAAATCTGTAACAAAGGGTTTCAAAGAGACCAGAATCTTCAACTTCATC-GTCGTGG 785
Query 255 ACACAACCTT-CCATGGAAGCTGAAACA-AAAGTCCAACAAAGAAGTGAGGAGGAAGGTG 312
|||||| || ||||||||||| || ||| || ||||||||||||| || || ||
Sbjct 786 ACACAA-TTTACCATGGAAGCTTCGTCAGAAA-TCAAACAAAGAAGTGAAGAAAAAAGTC 843
Query 313 TACCTTTGCCCGGAGGCCTCG-TGCGTCCACCATGACCCGGCACGTGCTCTCGGAGACCT 371
|| |||| || || | | | || || || || ||||| |||||||| | ||||| ||
Sbjct 844 TATGTTTGTCCTGAAG-TTAGTTGTGTTCATCACGACCCTTCACGTGCTTTAGGAGATCT 902
Query 372 CACCGGAATCAAGAAGCA-TTACTATCGGAAGCACGGTGAGAAGAAGTGGAAGTGCGATA 430
|| ||||||||||| || || | |||||| || ||||||||||||||||| || ||||
Sbjct 903 AACTGGAATCAAGAAACACTT-TTGTCGGAAACATGGTGAGAAGAAGTGGAAATGTGATA 961
Query 431 AATGCTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAGCTCACTCTAAGACCTGTGGTA 490
|||| |||||| ||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 962 AATGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTA 1021
Query 491 CCAAAGAGTATCGATGTGACTGTGGTAC 518
| ||||||||| |||||| ||||||||
Sbjct 1022 CTAAAGAGTATAAATGTGATTGTGGTAC 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73242595155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5