BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312467
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14690.1 | Symbols: MAP65-7 | microtubule-associated protein... 1633 0.0
AT2G01910.1 | Symbols: ATMAP65-6, MAP65-6 | Microtubule associa... 808 0.0
> AT1G14690.1 | Symbols: MAP65-7 | microtubule-associated protein
65-7 | chr1:5051760-5055252 REVERSE LENGTH=2458
Length=2458
Score = 1633 bits (884), Expect = 0.0
Identities = 1000/1055 (95%), Gaps = 12/1055 (1%)
Strand=Plus/Plus
Query 854 AGTTAAAGGATGTAGCGGGTTCACTTTTCGAGCTATGGAATCTAATGGACACATCTCAAG 913
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1083 AGTTAAAGGATGTAGCGGGTTCACTTTTTGAGCTATGGAATCTAATGGACACATCTCAAG 1142
Query 914 AAGAAAGAACTAAATTTGCAAGAGTCAGTTATGTTGTAAGATCATCTGAATCTGATATCA 973
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1143 AAGAAAGAACGAAATTTGCAAGTGTCAGTTATGTTGTAAGATCATCAGAATCTGATATCA 1202
Query 974 CTGAGCCAAATATCCTTTCTACTGAAACAATTGAACAGGTGTCTGCAGAAGTAGACTCTT 1033
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1203 CTGAGCCAAATATCCTCTCTAGTGAAACAATTGAACAGGTGTCTGCAGAAGTAGACTGTT 1262
Query 1034 TTAATAAGCTGAAAGCTAGTAGAATGAAGGAACTTGTGATGAAAAGAAGGTCTGAGTTAG 1093
||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||
Sbjct 1263 TTAATAAGCTGAAAGCTAGCAGAATGAAGGAGCTTGTGATGAAAAGAAGGACTGAGTTAG 1322
Query 1094 AGAATCTTTGCAGATTGGCTCACATTGAGGCTAACACAAGCACATCTCTTGAGAAATCAA 1153
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1323 AGAATCTTTGCAGATTGGCTCACATTGAGGCTGACACAAGCACATCGCTTGAGAAATCAA 1382
Query 1154 CTGCTTTGATTGATTCTGGTAATAAAAGATTAGTGGACCCTTCAGAGCTTCTTACAAATA 1213
||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1383 CTGCTTTGATTGATTCT-G--------GATTAGTGGACCCTTCAGAGCTTCTTACAAATA 1433
Query 1214 TTGAATTGCATATAAACAAAATCAAAGAAGAAGCACATAGCCGGAAAGAAATAATCGATA 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TTGAATTGCATATAAACAAAATCAAAGAAGAAGCACATAGCCGGAAAGAAATAATCGATA 1493
Query 1274 GGATTGACCGCTGGCTATCTGCGTGTGAAGAGGAAAACTGGCTAGAAGAATACAATCAGG 1333
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1494 GGATTGACCGCTGGTTATCTGCGTGCGAAGAGGAAAACTGGCTAGAAGAATACAATCAGG 1553
Query 1334 ATGAAACCCGGTATAGTGCTGGAAGAGGTGGACACGTAAACCTCAAGCACGCAGAACGAG 1393
||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |
Sbjct 1554 ATGAAACCCGGTATAGTGCCGGAAGAGGTGGACATGTAAACCTCAAGCATGCAGAACGCG 1613
Query 1394 CCCGGATCACAGTAAACAAGATCCCATCAATGGTTGACAATCTCATCAAGAAAACACTTT 1453
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 CCCGGATCACAGTAAACAAGATCCCATCAATGGTTGACAATCTCATCAAGAAAACACTTC 1673
Query 1454 TATGGGAGGACGAAACACGGAAATCATTTCTATATGATGGTGTTCGATTGGTATCCATAC 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 TATGGGAGGACGAAACACGGAAATCATTTCTATATGATGGTGTTCGATTGGTATCCATAC 1733
Query 1514 TTGAAGATTATAAATTGACAAGGAAACAACAGGAGGAGGAAAAGAAACGATACCGGGATC 1573
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1734 TTGAAGATTATAAATTGACAAGGAAACAACAGGAAGAGGAAAAGAGACGATACCGGGATC 1793
Query 1574 AAAAGAAGATGCATGATCTCTTAATAAAGAGGAGGGAATCAATTTACGGATCAAAACCGA 1633
||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct 1794 AAAAGAAGATGCAGGATCTGTTAATAAAGCGGAGGGAATCAATTTATGGATCAAAACCGA 1853
Query 1634 GTCCAAGAAGAAGCAACAGCGTAAAAAAGCCCAACGGATACAATGGGGATGCATCTGTGC 1693
||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 1854 GTCCAAGAAGAAGCAACAGTGTAAGAAAGACCAACGGATACAATGGGGATGCATCTGTGC 1913
Query 1694 CTCCTACGCCTCGCAGAAACTCAGCTGGAGCAACAAATACCGACATTATGACC-CCG-A- 1750
|||||||||| |||||||||||||||||||||||||||| |||||| |||||| || |
Sbjct 1914 CTCCTACGCCCCGCAGAAACTCAGCTGGAGCAACAAATAACGACATAATGACCACCCCAA 1973
Query 1751 GATCTTACTCGAGCCATCGTCAAAACGGATATTTCAAGGAAGTAAGGAGACTCTCAACAG 1810
|||| ||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 1974 GATCATACTCAAGCCATCGCCAAAACGGATATTTCAAGGAAGTAAGAAGACTGTCAACAG 2033
Query 1811 CTCCATTGAACTTTGTGGCCATACCAAAGGAAGACTCTGTCTCAACATACACATCAGTTT 1870
|||| |||||||||||||| ||||||||||||||||||||||| |||||||| || ||||
Sbjct 2034 CTCCTTTGAACTTTGTGGCAATACCAAAGGAAGACTCTGTCTCTACATACACTTCGGTTT 2093
Query 1871 ACGGCTCTGAACCAGATTCACCGTTATATAACTAA 1905
||||||||||||||||||||||||||||||||||
Sbjct 2094 GCGGCTCTGAACCAGATTCACCGTTATATAACTAA 2128
Score = 1253 bits (678), Expect = 0.0
Identities = 738/768 (96%), Gaps = 0/768 (0%)
Strand=Plus/Plus
Query 1 ATGCTGGAGATTGAAAGCCCTACGAGTCTCTGTTTCCGTGCAAACACTACTTGTAATGCT 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 317 ATGCTGGAGATTGAAAGCCCTACGAGTCTCTGTTTCCGTACAAACACTACTTGTAATGCT 376
Query 61 CTGCTTCGAGAGCTTCAGAAAATATGGGTTGATATTGGTGAGAGTGATGCTGAGAAAGAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 CTGCTTCGAGAGCTTCAGAAAATATGGGTTGATATTGGTGAGAGTGATGCTGAGAAAGAC 436
Query 121 CGGATGCTAATGGAATTGGAGAAGGAATGTCTCGAAATTTACAGGAGAAAAGTGGATGAG 180
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 437 CGGATGCTAATGGAATTGGAGAAGGAATGTCTTGAAATCTACAGAAGAAAAGTGGACGAG 496
Query 181 GCTGCAAATTCTAAGGCACAGCTTCATCAATCATTGGTATCAATTGAAGCTGAGATTGCT 240
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 497 GCTGCTAATTCCAAGGCACAGCTTCATCAGTCATTGGTATCAATTGAAGCTGAAATTGCT 556
Query 241 TCTTTAGTGGCTGCTCTTGGACTGTTAAACATCCACTCACCGATCAAAGCAAAGGAAGGT 300
|||||| |||||||||||||| |||| |||| |||||||||||| |||||||||||||||
Sbjct 557 TCTTTACTGGCTGCTCTTGGAGTGTTCAACAGCCACTCACCGATGAAAGCAAAGGAAGGT 616
Query 301 TCAAAATCATTGAAAGAAAAACTTGCTGCTGTGAGGCCAATGCTTGAAGACTTAAGATTG 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 617 TCAAAATCATTGAAAGAAAAACTTGCTGCTGTGAGGCCAATGCTTGAGGACTTAAGATTG 676
Query 361 GAAAAAGATGAAAGAATGAAGCAATTTGTGGATATAAAAGCGCAAATTGAGAAGATGAGT 420
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 677 CAAAAAGATGAAAGAATGAAGCAATTTGTGGATATAAAAGCACAAATTGAGAAGATGAGT 736
Query 421 GGTGAAATCTCTGGATACAGTGACCAACTCAACAAAGCGATGCTTGGTTCTTTGGCTCTT 480
|||||||| ||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 737 GGTGAAATATCTGGATACAGTGACCAACTCAACAAAACGATGGTCGGTTCTTTGGCTCTT 796
Query 481 GATGAACAAGACTTGACTCTTCGGAAGCTTAACGAGTATCAAACACATCTCCGCTCGCTC 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 GATGAACAAGACCTGACTCTTCGGAAGCTTAACGAGTATCAAACACATCTCCGCTCGCTC 856
Query 541 CAGAAAGAGAAGTCGGATCGTCTGAACAAGGTTTTGGATTATGTGAATGAGGTGCACACT 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 857 CAGAAAGAGAAGTCGGATCGTCTGAACAAGGTTTTGGACTATGTGAATGAGGTGCACACT 916
Query 601 CTATGCGGTGTTCTTGGAGTCGACTTTGGTCAAACTGTTAGCGAGGTTCATCCGAGCTTA 660
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 917 CTATGTGGTGTTCTTGGAGTCGACTTTGGTCAAACTGTTAGTGAGGTTCATCCGAGCTTA 976
Query 661 CATAGGACTGACCATGAGCAGTCTACAAACATTTCTGATGATACATTGGATGGTCTACAA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 CATAGGACTGACCATGAGCAGTCTACAAACATTTCTGATGATACATTGGATGGTCTACAC 1036
Query 721 CACATGATTGATAAGCTGAAAACCGAAAAGAGAGTCCGGTTTCAAAAG 768
||||||||| |||||||||||||||||| ||| || ||||||||||||
Sbjct 1037 CACATGATTCATAAGCTGAAAACCGAAAGGAGCGTTCGGTTTCAAAAG 1084
> AT2G01910.1 | Symbols: ATMAP65-6, MAP65-6 | Microtubule associated
protein (MAP65/ASE1) family protein | chr2:416911-420587
FORWARD LENGTH=2410
Length=2410
Score = 808 bits (437), Expect = 0.0
Identities = 862/1061 (81%), Gaps = 53/1061 (5%)
Strand=Plus/Plus
Query 857 TAAAGGATGTAGCGGGTTCACTTTTCGAGCTATGGAATCTAATGGACACATCTCAAGAAG 916
|||||||||||| || |||||| ||||||||||||||||||||||||||| | || ||||
Sbjct 1050 TAAAGGATGTAGTGGCTTCACTCTTCGAGCTATGGAATCTAATGGACACACCACAGGAAG 1109
Query 917 AAAGAACTAAATTT-GCAAGAGTCAGTTATGTTGTAAGATCATCTGAATCTGATATCACT 975
| |||||||||||| | || ||| | |||||||||||||||||||||| || ||||||||
Sbjct 1110 ACAGAACTAAATTTGGGAA-AGTTACTTATGTTGTAAGATCATCTGAAGCTAATATCACT 1168
Query 976 GAGCC-AAATATCCTTTCTACTGAAACAATTGAACAGGTGTCTGCAGAAGTAGACTCTTT 1034
||||| | |||||||| || ||||||||||||||||| ||| | ||||| ||| | |
Sbjct 1169 GAGCCGGGA-ATCCTTTCGACCGAAACAATTGAACAGGTATCTACGGAAGTGGACAGTCT 1227
Query 1035 TAATAAGCTGAAAGCTAGTAGAATGAAGGAACTTGTGATGAAAAGAAGGTCTGAGTTAGA 1094
| ||| |||||||| || ||||||||||| ||||| |||||| |||| || ||||||||
Sbjct 1228 CAGTAAACTGAAAGCAAGCAGAATGAAGGAGCTTGTAATGAAACGAAGATCCGAGTTAGA 1287
Query 1095 GAATCTTTGCAGATTGGCTCACATTGAGGCTAACACAAGCACAT-CTCTTGAGAAATCAA 1153
| ||||||||||| | |||||||| | || |||||||||| | | | |||||||||||
Sbjct 1288 GGATCTTTGCAGACTAACTCACATTCAACCTGACACAAGCACTTCCGC-TGAGAAATCAA 1346
Query 1154 CTGCTTTGATTGATTCTGGTAATAAAAGATTAGTGGACCCTTCAGAGCTTCTTACAAATA 1213
| || || || |||||| | |||||||||||||||||||||||||| ||||||
Sbjct 1347 CGGCATTAATAGATTCT-G--------GATTAGTGGACCCTTCAGAGCTTCTTGCAAATA 1397
Query 1214 TTGAATTGCATATAAACAAAATCAAAGAAGAAGCACATAGCCGGAAAGAAATAATCGATA 1273
||||| |||| ||||||||||| ||||| |||||||| || || ||||| || || || |
Sbjct 1398 TTGAAATGCAAATAAACAAAATTAAAGACGAAGCACAGAGTCGAAAAGATATCATGGACA 1457
Query 1274 GGATTGACCGCTGGCTATCTGCGTGTGAAGAGGAAAACTGGCTAGAAGAATACAATCAGG 1333
| |||||||| ||||| ||||| |||||||| ||||| ||||| ||||| || |||| ||
Sbjct 1458 GAATTGACCGTTGGCTCTCTGCATGTGAAGAAGAAAATTGGCTGGAAGAGTATAATCTGG 1517
Query 1334 ATGA-AACCCGGTATAGTGCTGGAAGAGGTGGACACGTAAACCTCAAGCACGCAGAACGA 1392
|||| || ||||||||||||||||||||| ||||| ||||||||||||| ||||| |||
Sbjct 1518 ATGAGAA-CCGGTATAGTGCTGGAAGAGGGGGACATGTAAACCTCAAGCGTGCAGAGCGA 1576
Query 1393 GCCCGGATCACAGTAAACAAGATCCCATCAATGGTTGACAATCTCATCAAGAAAACACTT 1452
|| ||| | ||| | || |||||||| ||||||||||| ||| |||||||||||||||
Sbjct 1577 GCTCGGGTTACAATCAATAAGATCCCCGGAATGGTTGACACTCTTATCAAGAAAACACTT 1636
Query 1453 TTATGGGAGGACGAAACACGGAAATCATTTCTATATGATGGTGTTCGATTGG-TATCCAT 1511
| ||||| || || | | ||| ||||||||||| || ||||||||||||| || |||
Sbjct 1637 GTGTGGGAAGAAGACATGCAGAAGTCATTTCTATACGACGGTGTTCGATTGGTTA-ACAT 1695
Query 1512 ACTTGAAGATTATAAATTGACAAGGAAACAACAGGAGGAGGAAAAGAAACGATACCGGGA 1571
||| ||||| |||||| ||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 1696 ACTAGAAGACTATAAACTGACAAGGAAACAACAGGAAGAGGAAAAGAAAAGATACAGGGA 1755
Query 1572 TCAAAAGAAGATGCATGATCTCTTAATAA-AGAGGAGGGAATCAATTTACGGATCAAAAC 1630
||||||||||| ||| |||||| || ||| | |||||||| ||||||||||||||||
Sbjct 1756 TCAAAAGAAGAGGCAGGATCTCCTACTAACCCA-AAGGGAATCCATTTACGGATCAAAAC 1814
Query 1631 CGAGTCCAAGAAGAAGCAACAGCGTAAAAAAGCCCAACGG----A---T-A-CAATGGGG 1681
|||||||||||||||||| |||| | | ||||||||| || | | | |||||||
Sbjct 1815 CGAGTCCAAGAAGAAGCAGCAGCTTCAGAAAGCCCAATGGTTTCAACATTAGCAATGGGA 1874
Query 1682 ATGCATCTGTGCCTCCTACGCCTCGCAGAAACTCAGCT-GG-AGCAACAAATACC-GACA 1738
||| || |||||||| |||||||| ||| ||| | | || | |||||| | || |||
Sbjct 1875 ATGGTTCAGTGCCTCCCACGCCTCGTAGAGGCTCGG-TAGGGA-CAACAACT-CCTGACG 1931
Query 1739 TTATG--A-CCCCGAGATCTTACTC-GAG-C--CATCGTCAAAACGGATATTTCAAGGAA 1791
|| | | |||| ||||||||||| | | | ||||| |||||||| |||||||| |||
Sbjct 1932 TTCTTCTAACCCCAAGATCTTACTCTG-GTCATCATCGCCAAAACGGGTATTTCAAAGAA 1990
Query 1792 GTAAGGAGACTCTCAAC-AGCTCCATTGAACTTTGTGGCCATACCAAAGGAAGACT-CTG 1849
|| || |||||||| || | |||| || |||| ||||||||| | ||||||||| | |||
Sbjct 1991 GTTAGAAGACTCTCTACTA-CTCCCTTAAACTATGTGGCCATGCAAAAGGAAGA-TACTG 2048
Query 1850 TCTCAAC-A--TACACATC-AGTTTACGGCTCTGAACCAGA 1886
| || || | |||||||| | |||| ||||||| |||||
Sbjct 2049 TTTCTACTACCTACACATCGA-TTTATAGCTCTGAGCCAGA 2088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94326824055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5