BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312475

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14760.1 | Symbols: KNATM | KNOX Arabidopsis thaliana meinox...   468    2e-131


> AT1G14760.1 | Symbols: KNATM | KNOX Arabidopsis thaliana meinox 
| chr1:5084688-5085213 REVERSE LENGTH=429
Length=429

 Score =  468 bits (253),  Expect = 2e-131
 Identities = 286/301 (95%), Gaps = 5/301 (2%)
 Strand=Plus/Plus

Query  1    ATGGATGTGAAGATAGATGAGAACAGT-TCCTTagaaaacatgaaacaagagatcaatca  59
            ||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct  1    ATGGATGTGAAGAAAGATGAGAACAGTAT-CTTAGAAAACATGAAACAAGAGATTAATCA  59

Query  60   gaatataaaagaagaagcagaagaagaaaaagaagagattctaaagaagagaaTCTCAAG  119
             | | |||||||||||||| ||||||   |||||||||||||||||||||||||||||||
Sbjct  60   TAGTCTAAAAGAAGAAGCACAAGAAG---AAGAAGAGATTCTAAAGAAGAGAATCTCAAG  116

Query  120  CCACCCTCTGTATGGGCTTCTTCTTCACTCACATCTCAATTGTTTAAAGGTGTGTTCCGG  179
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  117  CCACCCTTTGTATGGGCTTCTTCTTCACTCACATCTCAATTGTTTAAAGGTGTGTTCCGG  176

Query  180  CGACTTTGACTCACCGGAGATCATGAACACGGCTGATGATCTTGCCATATCCAAACTCTC  239
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  177  CGACTTTGACTCACCGGAGATCATGAACACGGCTGATGATCTTGCCCTATCCAAACTCTC  236

Query  240  TCTTCACCCTGATTCTTCCTCCGAAGCTACCTCTTCAGAACTTGATCAATTCATGGTTCT  299
            ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  TCTCCACCCTGACTCTTCCTCCGAAGCTACCTCTTCAGAACTTGATCAATTCATGGTTCT  296

Query  300  T  300
            |
Sbjct  297  T  297



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5