BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312479
Length=2094
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14810.1 | Symbols: | semialdehyde dehydrogenase family pro... 1367 0.0
AT1G14820.3 | Symbols: | Sec14p-like phosphatidylinositol tran... 1090 0.0
> AT1G14810.1 | Symbols: | semialdehyde dehydrogenase family protein
| chr1:5102424-5104695 REVERSE LENGTH=1450
Length=1450
Score = 1367 bits (740), Expect = 0.0
Identities = 800/830 (96%), Gaps = 0/830 (0%)
Strand=Plus/Plus
Query 926 ATCTCTCTATCTCCCACTTCTTCTTCCTCACGACGGCGACAATGGCGACGTTCACGCATC 985
|||||||| |||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 22 ATCTCTCTGTCTCTCACTTCTTCTTCCTCACGGCGGCGACAATGGCGACGTTCACTCATC 81
Query 986 AAACTCCACAAACCCATTTCCTCTCTCGCCTTCCTCTCAGAGCTAGACCCAGACACTTCT 1045
|||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 82 AAACCCCACAAACCCATTTCCTCTCTCGCCTTCCTCTCAGAGCTAAACCTAGACACTTCT 141
Query 1046 CCGCAAGAGTCAAAATGTCTCTCCAAGAATCTGCGCCTTCTCTCGCCGTCGTTGGCGTTA 1105
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 142 CCGCAAGAGTCAAAATGTCTCTCCAAGAATCTGCGCCTTCACTCGCCGTCGTTGGCGTTA 201
Query 1106 CCGGAGCCGTCGGACAAGAATTCCTCTCCGTGTTATCCGATCGAGACTTCCCTTATAGCT 1165
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 202 CCGGAGCCGTCGGACAAGAATTCCTCTCCGTCTTATCCGATCGAGACTTCCCTTATAGCT 261
Query 1166 CCGTCAAGATGCTTGCATCGAAACGCTCCGCAGGGAAACGTGTTGCCTTCGATGGCCGTG 1225
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 262 CCATCAAGATGCTTGCATCGAAACGCTCCGCAGGGAAGCGTGTTGCCTTCGATGGCCATG 321
Query 1226 AATACACGGTGGAGGAGCTCACGGCAGAGAGCTTCGACGGCGTAGACATTGCTTTGTTCA 1285
||||||||||||||||||||||||| || |||||| |||| |||||||| ||||||||||
Sbjct 322 AATACACGGTGGAGGAGCTCACGGCGGATAGCTTCAACGGTGTAGACATAGCTTTGTTCA 381
Query 1286 GTGCTGGTGGATCTATAAGCAAGGAGTTTGGTCCTCTCGCGGCGGAGAAAGGAACCATTG 1345
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 382 GTGCTGGTGGATCCATAAGCAAAGAGTTTGGTCCTCTGGCGGCGGAGAAAGGAACCATTG 441
Query 1346 TTGTTGATAATAGCTCGGCTTTTAGAATGGTTGATGGAGTTCCGCTTGTGATTCCTGAAG 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TTGTTGATAATAGCTCGGCTTTTAGAATGGTTGATGGAGTTCCGCTTGTGATTCCTGAAG 501
Query 1406 TGAATCCAGAAGCAATGAAAGGGATTAAAGTTGGAATGGGCAAAGGAGCTTTGATTGCAA 1465
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 502 TGAATCCAGAAGCAATGAAAGGGATCAAAGTTGGAATGGGCAAAGGGGCTTTGATTGCAA 561
Query 1466 ACCCTAATTGCTCCACCATTATCTGTTTGATGGCAGTTACTCCTCTTCATCATCACGCAA 1525
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 562 ACCCTAATTGCTCCACCATTATCTGTTTGATGGCTGTTACGCCTCTTCATCATCACGCAA 621
Query 1526 AGGTGAAGAGAATGGTGGTTAGTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTA 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 AGGTGAAGAGAATGGTGGTTAGTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTA 681
Query 1586 TGGAAGAGCTTGTGCAGCAGACTCGTGAGGTTTTAGAGGGTAAACCTCCGACTTGTAACA 1645
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TGGAAGAGCTTGTTCAGCAGACTCGTGAGGTTTTAGAGGGTAAACCTCCGACTTGTAACA 741
Query 1646 TCTTCGGACAGCAGTATGCATTTAACTTATTTTCGCATAATGCTCCTATTCTTGACAATG 1705
||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 742 TCTTCGGGCAGCAGTATGCATTTAACTTGTTTTCACATAATGCTCCTATTCTTGACAACG 801
Query 1706 GTTACAATGAAGAGGAAATGAAACTTGTGAAGGAGACAAGGAAGATCTGG 1755
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GTTACAACGAAGAGGAAATGAAACTTGTGAAGGAGACAAGGAAGATCTGG 851
Score = 411 bits (222), Expect = 2e-113
Identities = 232/237 (98%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 1858 AACACAGCAAGGGAGATACTGAAGAAAGCACCTGGAGTTTATATAATAGACGACCGTGCT 1917
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 954 AACACAGCAAGGGAGATACTGAAGAAAGCACCTGGAGTTTATATAATAGATGACCGTGCT 1013
Query 1918 TCAAATACTTTCCCTACTCCACTAGATGTCTCTAACAAAGACGATGTAGCGGTTGGTAGG 1977
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1014 TCAAATACTTTCCCTACTCCACTCGATGTCTCTAACAAAGACGATGTAGCGGTTGGTAGG 1073
Query 1978 ATAAGGCGAGACGTGTCTCAAGATGGCAATTTCGGGCTGGACATATTTGTTTGCGGAGAC 2037
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1074 ATAAGGCGAGACGTGTCTCAAGATGGCAATTTCGGGCTGGACATATTCGTTTGTGGAGAC 1133
Query 2038 CAAATACGGAAAGGAGCTGCTCTGAATGCTGTTCAGATCGCTGAGATGCTTCTCTGA 2094
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CAAATACGCAAAGGAGCTGCTCTGAATGCTGTTCAGATCGCTGAGATGCTTCTCTGA 1190
> AT1G14820.3 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr1:5105114-5106954 REVERSE LENGTH=1043
Length=1043
Score = 1090 bits (590), Expect = 0.0
Identities = 652/683 (95%), Gaps = 0/683 (0%)
Strand=Plus/Plus
Query 212 AGGGATATGAAAAACCGACATTGATGAGGTTCCTGGTGGCAAGATCAATGGACCCAGTCA 271
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AGGGATATGACAAACCAACATTGATGAGGTTCCTGGTGGCAAGATCAATGGACCCAGTCA 291
Query 272 AAGCAGCAAAGATGTTTGTAGATTGGCAAAAGTGGAGAGCCTCCATGATTCCTCCAACTG 331
| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 292 AGGCAGCAAAGATGTTTGTAGATTGGCAAAAATGGAGAGCCTCCATGGTTCCTCCAACTG 351
Query 332 GATTCATCCCTGAGTCAGAAGTGAAGGATGAATTGGAATTCAGAAAGGTCTGTCTTCAGG 391
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 352 GATTCATCCCTGAGTCAGAAGTGCAGGATGAATTGGAATTCAGAAAGGTCTGTCTTCAGG 411
Query 392 GTCCAACCAAATCCGGACACCCTTTGGTGCTTGTCATAACCTCTAAGCATTTTCCTTCTA 451
|||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 412 GTCCGACCAAATCCGGACACCCATTGGTGCTTGTCATAACCTCTAAGCATTTTGCTTCTA 471
Query 452 AGGATCAAGTTAACTTCAAGAAGTTCGTTGTTTATGTGCTAGACAAAACAATCGCAAGTG 511
|||||| || ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 472 AGGATCCAGCTAACTTCAAGAAGTTTGTTGTTTATGCGCTAGACAAAACAATCGCAAGTG 531
Query 512 GCATCAAAGGCAACGAAATTGGAGATGAGAAGTTAGTAGCCGTTATTGATCTGGCAAACA 571
||| ||| ||||| ||| |||||| |||||| ||||||||||||||||||||||||||||
Sbjct 532 GCAACAATGGCAAAGAAGTTGGAGGTGAGAAATTAGTAGCCGTTATTGATCTGGCAAACA 591
Query 572 TTACATACAAGAATCTTGATGCTCGTGGATTGATCACTGCCTTTCAATTCTTACAATCTT 631
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 592 TTACATACAAGAACCTTGATGCTCGTGGATTGATCACTGGCTTTCAATTCTTACAATCTT 651
Query 632 ACTACCCGGAACGCCTTGCAAAATGCTACCTCTTGCATATGCCCGGATTCTTCGTGACCG 691
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 652 ACTACCCGGAACGCCTTGCAAAATGCTACATTTTGCATATGCCCGGATTCTTCGTGACCG 711
Query 692 TTTGGAATTTCGTCTGCCGTTTTCTAGAAAAAGCAACTCAGGAAAAGATTGTGATAGTAA 751
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 712 TTTGGAAATTCGTCTGCCGTTTTCTAGAGAAAGCAACTCAGGAAAAGATTGTGATAGTTA 771
Query 752 CGGACGGAGAAGAACTGAAAAAATTCGAGGAGGAGATCGGAGCAGAAGCTTTACCGGAAG 811
|||| |||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 772 CGGATGGAGAAGAACAGAGAAAATTCGAGGAGGAGATCGGAGCAGATGCTTTACCGGAAG 831
Query 812 AGTACGGTGGCCGAGCTAAGCTCACAGCAATCCAAGATGTTCTTCTTCCTCAGTCTGCTC 871
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 832 AGTACGGTGGCCGAGCTAAGCTCACAGCAATCCAAGATGTTCTTCTTCCTCAGGCTGCTC 891
Query 872 CAGTAACTCTAACAAACAATAAT 894
|||||||||||||||||||||||
Sbjct 892 CAGTAACTCTAACAAACAATAAT 914
Score = 128 bits (69), Expect = 2e-28
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAAAGCCAAGAACTTGCCTTGACCCAGTTGAGAAAATCGGTCGAGAAACTCTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 ATGGAGGAAAGCCAAGAACTTGCCTTGACCCAGTTGAGAAAATCGGTCGAGAAACTCTCT 221
Query 61 TCTTCCACTGAG 72
||||| ||||||
Sbjct 222 TCTTCTACTGAG 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103814727060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5