BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312489
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14930.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 688 0.0
AT1G14940.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 501 2e-141
AT4G14060.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 303 7e-82
> AT1G14930.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:5152263-5153084 REVERSE
LENGTH=719
Length=719
Score = 688 bits (372), Expect = 0.0
Identities = 437/469 (93%), Gaps = 2/469 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATGTCAGGAACATATGTGGCGGAAGTACCGCTGAAAGGGTCGGCGGAGAAACAC 60
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 50 ATGGCGATGTCAGGAAAATACGTGGCGGAAGTACCGCTGAAAGGGTCGGCGGAGAAACAC 109
Query 61 TATAGGAGATGGAGGAGCCAAAACAACCTCTTCCCGGACGCCATCGGCCACCATGTCCAA 120
|| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 110 TACAGGCGATGGAGGAGCCAAAACAATCTCTTCCCGGACGCCATCGGCCACCATGTCCAA 169
Query 121 GGTGTCACCGTCCACGACGGCGACTGGAAATCCCACGGTTCCATCAAATCCTGGAACTAC 180
|| |||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||
Sbjct 170 GGCGTCACCGTCCACGATGGCGACTGGGACTCCCACGGCTCCATCAAATCCTGGAACTAC 229
Query 181 ACACTCGATGGGAAGCCGGAAGTCATCAAGGAGAAGAGAGATATAGACGACGAGAAGATG 240
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 230 ACACTTGATGGGAAGCCGGAAGTCATCAAGGAGAAAAGAGAGATAGACGACGAGAAGATG 289
Query 241 GCATTGACGTTCAGAGGACTAGAGGGGCACGTGATGGAGCAGTACAAGGTGTATAACGTC 300
|| ||||||||||||||||||||||| || ||||||||| |||||||| |||| | ||
Sbjct 290 GCGTTGACGTTCAGAGGACTAGAGGGTCATGTGATGGAGAAGTACAAGAAGTATGAGGTT 349
Query 301 AACTTACAGTTCATTCCCAAGTCGAAGGAAGGCTGCGTCTGCAAAGTCACTCTGATATGG 360
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 350 ATCTTACAGTTCATTCCCAAGTCGAACGAAGGCTGCGTCTGCAAAGTCACTCTGATATGG 409
Query 361 GAGAAGCGCAAGGAAGACTCCCCCGAACC-AGTCAACTACGTGAAGTTTGTCAAGAGCTT 419
||||| ||||| ||||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 410 GAGAATCGCAACGAAGACTCCCCCGAACCCA-TCAACTACATGAAGTTTGTCAAGAGCTT 468
Query 420 AGTTGCTGACATGGACGACCACGTCCTCAAGGGCCAGAACAAAGCTTAA 468
||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 469 AGTTGCTGATATGGATGACCACATCCTCAAGGGCCAGAACAAAGCTTAA 517
> AT1G14940.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:5154537-5155563 REVERSE
LENGTH=757
Length=757
Score = 501 bits (271), Expect = 2e-141
Identities = 408/473 (86%), Gaps = 14/473 (3%)
Strand=Plus/Plus
Query 1 ATGGCGATGTCAGGAACATATGTGGCGGAAGTACCGCTGAAAGGG-TCGGCGGAGAAACA 59
||||| ||||| |||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct 52 ATGGCAATGTCTGGAACATACGTGGCGGAGGTACCGCT-TAAGGGATCGGCGGAGAAACA 110
Query 60 CTA-TAGGAGATGGAGGAGCCAAAACAACCTCTTCCCGGACGCCATCGGCCACCATGTCC 118
||| || || ||||||| | ||||| || |||||| ||| ||| |||||||||| |||
Sbjct 111 CTACAAGAAG-TGGAGGAACGAAAACCACGTCTTCCAGGATGCCGTCGGCCACCACATCC 169
Query 119 AAGG-TGTCACCGTCCACGACGGCGACTGGAAATCCCACGGTTCCATCAAATCCTGGAAC 177
|||| || ||| | || ||||| |||||| | |||||||| ||||||| ||| |||||
Sbjct 170 AAGGTTG-CACTATGCATGACGGTGACTGGGACTCCCACGGCTCCATCAGATCATGGAA- 227
Query 178 TA-CACACT-CGATGGGAAGCCGGAAGTCATCAAGGAGAAGAGAGATATAGACGACGAGA 235
|| |||| | |||||| |||||||||||| |||||||||||||||| ||||||||||| |
Sbjct 228 TATCACA-TGCGATGGAAAGCCGGAAGTCTTCAAGGAGAAGAGAGAGATAGACGACGAAA 286
Query 236 AGATGGCATTGACGTTCAGAGGACTAGAGGGGCACGTGATGGAGCAGTACAAGGTGTATA 295
||||||| |||||||| | ||| |||||||| || | ||||||| |||||||| ||||
Sbjct 287 AGATGGCGTTGACGTTGAAAGGGCTAGAGGGTCAAGCGATGGAGAAGTACAAGAAGTATG 346
Query 296 ACGTCAACTTA-CAGTTCATTCCCAAGTCGAAGGAAGGCTGCGTCTGCAAAGTCACTCTG 354
| || | | || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 347 AGGTTATC-TACCAGTTCATTCCCAAGTCGAAGGAAGGCTGCGTCTGCAAAATCACTCTC 405
Query 355 ATATGGGAGAAGCGCAAGGAAGACTCCCCCGAA-CCAGTCAACTACGTGAAGTTTGTCAA 413
|||||||| |||||||| ||| ||||||||||| ||| |||||||| |||||||||||||
Sbjct 406 ATATGGGAAAAGCGCAACGAAAACTCCCCCGAACCCA-TCAACTACATGAAGTTTGTCAA 464
Query 414 GAGCTTAGTTGCTGACATGGACGACCACGTCCTCAAGGGCCAGAACAAAGCTT 466
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 465 GAGCTTAGTTGCTGACATGGACGACCACGTCCTCAATGGCCAGAACAAAGCTT 517
> AT4G14060.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr4:8107337-8108307 FORWARD
LENGTH=673
Length=673
Score = 303 bits (164), Expect = 7e-82
Identities = 368/463 (79%), Gaps = 28/463 (6%)
Strand=Plus/Plus
Query 1 ATGGCGATGTCAGGAACATATGTGGCGGAAGTACCGCTGAAAGGGTCGGCGGAGAAACAC 60
||||| | |||||||||||||||| |||| || || ||||||| || ||||||||||||
Sbjct 69 ATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACAC 128
Query 61 TATAGGAGATGGAGGAGCCAAAACAACCTCTTCCCGGACGCCATCGGCCACCATGTCCAA 120
|| | | | ||||||| | ||| |||| ||||| ||||||||||||||||| |||||
Sbjct 129 TACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCGACGCCATCGGCCACCACATCCAA 188
Query 121 GGTGTCACCGTCCACGACGGCGACTGGAAATCCCACGGTTCCATCAA-ATCCTGGAACTA 179
||||||||||||||||||||||| ||| | ||||| || || |||| || ||||||||
Sbjct 189 GGTGTCACCGTCCACGACGGCGAATGGGACTCCCATGGAGCCCTCAAGATT-TGGAACTA 247
Query 180 CACACTCGATGGGAAGCCGGA-A-GTCATCAAGGAGAAGAGAGATATAGACGACGAGAAG 237
|||| | |||||||| ||||| | || ||||||||| |||||| |||||||| || ||
Sbjct 248 CACATTAGATGGGAAACCGGAGATGT--TCAAGGAGAGGAGAGAGATAGACGATGAAAAC 305
Query 238 ATGGCATTGACGTTCAGA-GGACTAGAGGGGCACGTGATGGAGCAG-T-ACAAGGTGTAT 294
||||| | |||||| | |||||||| || ||||||||||||||| | | ||| |||||
Sbjct 306 ATGGCGGTAACGTTC-GTTGGACTAGAAGGTCACGTGATGGAGCAGCTTA-AAG-TGTAT 362
Query 295 -A-ACGTCAACTTACAGTTCATTCCCAAGTCGAAGGAAGGC-TGCGTCTGCAA-AGTCAC 350
| || || ||||||||||||| ||||| ||| | | ||| ||||| | ||||
Sbjct 363 GATAC--CATTTTACAGTTCATTCAAAAGTCCCCGGATGATAT-CGTTTGCAAGA-TCAC 418
Query 351 TCTGATATGGGAGAAGCGCAAG--GAAGACTCCCCCGAACC-AGTCAACTACGTGAAGTT 407
| ||| ||||||||||| | | || ||||| || ||||| || ||||||| |||||||
Sbjct 419 TATGACCTGGGAGAAGCG-A-GCCGATGACTCGCCTGAACCCAG-CAACTACATGAAGTT 475
Query 408 TGTCAAGAG-CTTAGTTGCTGACATGGACGACCACGTCCTCAA 449
|||||||| || | |||||||||||||| |||||| |||||
Sbjct 476 GGTCAAGAGTCTC-GCTGCTGACATGGACGCCCACGTTCTCAA 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22253727121
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5