BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312501
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15050.1 | Symbols: IAA34 | indole-3-acetic acid inducible 3... 721 0.0
> AT1G15050.1 | Symbols: IAA34 | indole-3-acetic acid inducible
34 | chr1:5182256-5183243 REVERSE LENGTH=558
Length=558
Score = 721 bits (390), Expect = 0.0
Identities = 441/465 (95%), Gaps = 6/465 (1%)
Strand=Plus/Plus
Query 1 ATGGACTCAGACCCACAT-GGTGTTATCCCAAGTTCTCCCAAGTATCATCCATATTACCC 59
|||||||||||||||| | |||||| |||||| ||||||||||||||||||||||||| |
Sbjct 97 ATGGACTCAGACCCAC-TCGGTGTTTTCCCAAATTCTCCCAAGTATCATCCATATTACTC 155
Query 60 TCAGAACACGGAGTGTGGTGGCGTAATCGATTTAGGTCTCAGCCTGAGAACCATACAACA 119
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 GCAGACCACGGAGTTTGGTGGCGTAATCGATTTAGGTCTCAGCCTGAGAACCATACAACA 215
Query 120 TGAGATTTACCA-TACATCTGGCCAAAAATATTGTAGTAATGAAGGATACAGACGGAATT 178
|||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 216 TGAGATTTACCACT-CATCTGGCCAAAGATATTGTAGTAATGAAGGATACAGACGGAAGT 274
Query 179 GGGGTTATGTAAAGGTCACTATGGATGGGTTT-GTGGTAGGTCGCAAGGTATGTGTTCTT 237
||||||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||
Sbjct 275 GGGGTTATGTAAAGGTCACCATGGAT-GGTTTGGTGGTAGGTCGCAAGGTCTGTGTTCTT 333
Query 238 GATCATGGAGGCTATTCAACTCTTGCTCATCAACTCGAGGACATGTTTGGGATGCAGAGT 297
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GATCATGGAAGCTATTCAACTCTTGCTCATCAACTCGAGGACATGTTTGGGATGCAGAGT 393
Query 298 GTGTCGGGATTGAGATTGTTCCAGATGGAGTCTGAGTTCTGTTTGGTCTACAGAGACGAA 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GTGTCGGGATTGAGGTTGTTCCAGATGGAGTCTGAGTTCTGTTTGGTCTACAGAGACGAA 453
Query 358 GAAGGTATCTGGAGGAATGCTGGGGATGTTCCATGGAATGAGTTCATAGAAAGCGTGGAG 417
|||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GAAGGTCTGTGGAGAAATGCTGGGGATGTTCCATGGAATGAGTTCATAGAAAGCGTGGAG 513
Query 418 CGGCTGAGAATCACAAGAAGAAACGATGTTATACTTCCGTTTTAA 462
|||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct 514 CGGCTGAGAATCACAAGAAGAAACGATGCTGTACTTCCCTTTTAA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22017274062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5