BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312503
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15080.1 | Symbols: ATPAP2, ATLPP2, LPP2 | lipid phosphate p... 1489 0.0
> AT1G15080.1 | Symbols: ATPAP2, ATLPP2, LPP2 | lipid phosphate
phosphatase 2 | chr1:5187626-5189673 FORWARD LENGTH=1275
Length=1275
Score = 1489 bits (806), Expect = 0.0
Identities = 895/938 (95%), Gaps = 5/938 (1%)
Strand=Plus/Plus
Query 1 ATGCCCGAAATTCAATTGGGTGTTCATACAATAAGATCCCATGGAGTCACAGTCGCGAGG 60
||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 206 ATGCCTGAAATTCATTTGGGTGCTCATACAATAAGATCCCATGGAGTAACAGTCGCGAGG 265
Query 61 TTCCATATGCATGACTGGCTCATTCTTCTGCTGCTTATCGTCATCGAAATTGTTCTCAAT 120
||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct 266 TTCCACATGCATGACTGGCTCATTCTTCTGCTGCTAATAGTCATTGAAATTGTTCTTAAT 325
Query 121 GTCATCGAACCCTTTCATCGTTTTGTTGGAGAAGATATGCTCACTGATCTCAGATACCCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 GTCATCGAACCCTTTCATCGTTTTGTTGGAGAAGATATGCTCACTGATCTCAGATACCCT 385
Query 181 CTGCAAGACAACACAATTCCTTTCTGGGCTGTCCCGTTGATAGCTATCGTACTCCCTTTT 240
||||| ||||||||||||||||||||||||||||||||||||||| | || || ||||||
Sbjct 386 CTGCAGGACAACACAATTCCTTTCTGGGCTGTCCCGTTGATAGCTGTTGTGCTACCTTTT 445
Query 241 GCTGTCATTTGTGTTTACTACTTCATCAGAAATGATGTTTATGACCTGCATCATGCAATA 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 446 GCTGTCATTTGTGTTTACTACTTCATTAGAAATGATGTTTATGACCTGCATCATGCAATA 505
Query 301 CTAGGTCTTTTGTTCTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCT 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 CTAGGGCTTTTGTTCTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCT 565
Query 361 GTAGGTCGACCTCGTCCTGACTTCTTTTGGCGTTGTTTCCCTGATGGTATAGGGATCTTT 420
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 566 GTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGGTATAGGGATCTTT 625
Query 421 CACAACGTCAC-AAGGAATGTTCTGTGTACTGGAGCTAAGGATGTGGTCAAAGAGGGACA 479
||||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 626 CACAATGTCACGAA-GAATGTTCTATGTACTGGAGCTAAGGATGTGGTCAAAGAGGGACA 684
Query 480 CAAAAGCTTCCCCAGCGGGCACACATCTTGGTCGTTTGCTGGTCTAGGATTTCTAGCGTT 539
||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 685 CAAGAGCTTCCCCAGCGGCCACACATCTTGGTCGTTTGCTGGTCTAGGATTTCTATCGTT 744
Query 540 ATACTTGTCTGGGAAAATCAAGGTGTTTGACCAGAGAGGGCATGTTGCAAAGCTCTGCAT 599
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 745 ATACTTGTCTGGGAAAATCAGGGTGTTTGACCAGAGAGGGCATGTTGCAAAGCTCTGCAT 804
Query 600 TGTGATCCTACCTCTACTGGTTGCAGCATTGGTTGGTGTATCCAGAGTTGATGACTATTG 659
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TGTGATTTTACCTCTACTGGTTGCAGCATTGGTTGGTGTATCCAGAGTTGATGACTATTG 864
Query 660 GCATCACTGGCAAGATGTGTTTGGAGGAGCTATCATAGGATTGACTGTGGCCACGTTTTG 719
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 865 GCATCACTGGCAAGATGTTTTTGGAGGAGCTATCATAGGATTGACTGTGGCCACATTTTG 924
Query 720 TTACCTGCAATTCTTCCCTCCTCCGTACCATCCAGACGGTTGGGGACCTCATGCGTACTT 779
||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct 925 TTATCTGCAATTTTTCCCTCCTCCATACGATCCAGACGGTTGGGGACCTCATGCCTACTT 984
Query 780 CCAGATGCTCGCAGACTCAAGAAACGATGTCCAAAATTCAGCAGGAATGAATCATCTAAG 839
||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 985 CCAGATGCTGGCAGACTCAAGAAATGATGTCCAAGATTCAGCAGGAATGAATCATCTAAG 1044
Query 840 CGTGAGGCAAACAGAGCTAGAGAGCGTGTACGTTGATCGAGAAGAGACGTCCATGGAAAT 899
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1045 CGTGAGGCAAACAGAGCTAGAGAGCGT--ACGTTGATGGAGAAGAGACGTCCATGGAAAT 1102
Query 900 ATCAAGAAGCAACACGCGGGACACCACCCGTAATGCTT 937
|||||||||||||||||||||||||||||||| |||||
Sbjct 1103 ATCAAGAAGCAACACGCGGGACACCACCCGTA-TGCTT 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5