BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312524
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15330.1 | Symbols: | Cystathionine beta-synthase (CBS) pro... 1613 0.0
> AT1G15330.1 | Symbols: | Cystathionine beta-synthase (CBS) protein
| chr1:5274346-5275602 FORWARD LENGTH=1184
Length=1184
Score = 1613 bits (873), Expect = 0.0
Identities = 998/1060 (94%), Gaps = 2/1060 (0%)
Strand=Plus/Plus
Query 1 ATGCAAGAAGAGAAGAGCAAAGAAGATCACAGCCGCCTGATCAATGTCACGGTCAAAGAT 60
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 23 ATGCAAGAAGAGAAGAGCAAAGAAGATCACAGCCGTCTGATCAATGTCACGGCCAAAGAT 82
Query 61 CTAACGGCCAGAAACCGACGGCTCGTGGAGGTTCCGTACACAGCAACACTCTCTCACGCA 120
||||||| |||||||||||||||||| ||||| || ||||| || ||||| || ||||||
Sbjct 83 CTAACGGTCAGAAACCGACGGCTCGTCGAGGTACCATACACGGCTACACTTTCCCACGCA 142
Query 121 ATGAACACATTGGTGGCTAACTCCATCTCAGCCCTCCCAGTGGCTGCACCTCCAGGACAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 143 ATGAACACATTGGTGGCTAACTCCATCTCAGCCCTCCCAGTGGCTGCACCTCCAGGCCAC 202
Query 181 TGGATTGGCGCCGGCGGTTCCATGATCATGGAGTCTGACAAACAAACTGGAGTTGTAAGA 240
||||| || ||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 203 TGGATCGGAGCCGGTGGTTCCATGATCATGGAATCAGACAAACAAACTGGAGTTGTAAGA 262
Query 241 AAACACTACATCGGGATTCTCACTATGCTTGACATACTTGCTCATATCGCCGGTGAAGAT 300
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 263 AAACACTATATCGGGATTCTCACGATGCTTGACATACTTGCTCATATCGCCGGTGAAGAT 322
Query 301 TCCAATCTCTCTCATCTTGATCGCAAGATGGGTTCACAGGTGTCATCCATCATCGGTCAT 360
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 323 TCCAATCTCTCTGATCTTGATCGCAAGATGAGTTCACAGGTGTCATCCATCATCGGTCAT 382
Query 361 TGCCTTGAAGGACTCAGTCTTTGGACATTGAATCCTAATACCAGCTTGTTAGAGTGCATG 420
||||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct 383 TGCCTCGAAGGACTCAGTCTCTGGACACTGAATCCTAATACCAGCGTGTTAGAGTGCATG 442
Query 421 GAAGTGTTTAGCAAAGGGATCCATCGAGCTTTAGTGCCAGTAGAGAGCAGCATAGAGAGC 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 443 GAAGTGTTTAGCAAAGGGATCCATCGAGCTTTAGTGCCAGTGGAGAGCAGCATAGAGAGC 502
Query 481 AATAACACCATTGCAGGAGTTGAGTTGATTGAGTCAGCCTCTGCTTACAAGATGCTTACT 540
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 503 AATAACACTATTGCAGGAGTTGAGTTGATTGAGTCTGCCTCTGCTTACAAGATGCTTACT 562
Query 541 CAGATGGATCTCTTGCGGTTCCTCAAAGACCATCACTTTGATGACCTCAAGACTGTCCTC 600
||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 563 CAGATGGATCTCTTGCGTTTCCTTAAAGACCATCACTTTGATGACCTCAAAACTGTTCTC 622
Query 601 TCACGCTCCATCTCCGATCTTCG-AGCTGTTAATGATTCCGTTTACGCCATCACCGAGAG 659
|||||||||||||| ||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 623 TCACGCTCCATCTCTGATCT-CGGAGCTGTTAATGATTCCGTTTACGCCATCACAGAGAG 681
Query 660 AACAACTGTTTCCAATGCCATCAACGTTATGAAGGGTGCTCTTCTCAACGCTGTCCCCAT 719
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 682 AACCACTGTTTCCAATGCCATCAACGTTATGAAGGGTGCTCTGCTCAACGCTGTCCCCAT 741
Query 720 CGTTCACGCACCTGATATAGCACAAGAGGATCATCTACAGCTAATCAATGGGAGGTATAG 779
|||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||||
Sbjct 742 CGTTCATGCACCTGATATAGCACAAGAGGATCATCTGCAGCTAGTCAATGGGAGACATAG 801
Query 780 GAAAGTGGTAGGAACGTTTTCAGCAACGGATTTAAAAGGATGTCGTCTACCGGAGTTGCA 839
|||||| |||| |||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 802 AAAAGTGATAGGTACGTTTTCAGCAACTGATTTGAAAGGATGTCGCCTACCGGAGTTGCA 861
Query 840 GACGTGGCTGCCACTCACAGCTTTGGATTTCACTGAGAAAGCTTCGGGGAAGGAGAGGGA 899
||||||||||||||||||||| |||| ||||| |||||| |||||||||||||||||||
Sbjct 862 AACGTGGCTGCCACTCACAGCTCTGGAGTTCACCGAGAAAACTTCGGGGAAGGAGAGGGA 921
Query 900 GATGGTGAGTTGCGGTGTGGAGTCAACTATGGAGGAAGCGATTGAGAAAGTGGTGACCAG 959
| |||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 922 GGTGGTGAGTTGCGGTGTGGAGTCGACTATGGAGGAAGCTATAGAGAAAGTGGTGACCAG 981
Query 960 AGGTGTGCACAGAGTGTGGGTGATGGACCAACAGGGTCTGCTTCAAGGAGTCGTCTCCCT 1019
||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 982 AGGAGTGCACAGAGTATGGGTGATGGATCAACAGGGTCTGCTTCAAGGAGTCGTCTCCCT 1041
Query 1020 CACTGATATCATACGCTCCCTAAGAGCTGCTCTTTCGTAA 1059
||||||||||||||||||||||||| || |||||||||||
Sbjct 1042 CACTGATATCATACGCTCCCTAAGATCTACTCTTTCGTAA 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5