BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312525
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15340.1 | Symbols: MBD10 | methyl-CPG-binding domain 10 | c... 824 0.0
> AT1G15340.1 | Symbols: MBD10 | methyl-CPG-binding domain 10 |
chr1:5275677-5277689 REVERSE LENGTH=1588
Length=1588
Score = 824 bits (446), Expect = 0.0
Identities = 558/610 (91%), Gaps = 15/610 (2%)
Strand=Plus/Plus
Query 465 AGAGGGTGAGAAGGGGGAGAAGGAGGGTGAAAAGGCCGAGGCTGAGAACAAAGAGGCAGA 524
||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 776 AGAGGCTGAGAA---GGAGAAGGAGGGTGAAAAGGCTGAGGCTGAGAACAAAGAGGCAGA 832
Query 525 AGTTGTGACTGACAAGAAAGAGTCCATGGAAGTGGATACCTTTGAGTTGGAGAAGAAGAC 584
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 833 AGTTGTGAGAGACAAGAAAGAGTCCATGGAAGTGGATACCTCTGAGTTGGAGAAGAAGGC 892
Query 585 TGAGAGTGGAGGAGGAGCTAAAGAACCTTCCAAAGTTGAAGGCCTCAAGGACACTGAAAT 644
|| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TGGGAGTGGAGAAGGAGCTGAAGAACCTTCCAAAGTTGAAGGCCTCAAGGACACTGAAAT 952
Query 645 GAAAGAGCCTCAGGATGTAGTTGCTGAGGGTGATGGAGAGAAGAAGCCTGCGGAGGAAAA 704
||||||| | ||||| || ||| |||||| ||||| ||||||||||||||| ||||||||
Sbjct 953 GAAAGAGGCGCAGGAAGTTGTTACTGAGGCTGATGTAGAGAAGAAGCCTGCAGAGGAAAA 1012
Query 705 GACTGAGAACAAGGGCAGCGTGACAACAGAGGCTAACGGAGAACCGAATGTGACCCCGGA 764
||||||||||||||||||||||||||| || ||||||||||||| |||||| |||| ||
Sbjct 1013 GACTGAGAACAAGGGCAGCGTGACAACCGAAGCTAACGGAGAACAGAATGTAACCCTGGG 1072
Query 765 TGAACCTAATCTTGATGCAGATGCTCAAGCAAATAAGGGAAAAGAATCCAAAGAATATGA 824
||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1073 TGAGCCTAACCTTGATGCAGATGCTGAAGCAGATAAGGGAAAAGAATCCAAAGAATATGA 1132
Query 825 TGAGAAGAAGAGTGAAGCTGAGGCAAATAAGGAAAATGACACTCAAGAATCTGATGAGAA 884
|||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1133 TGAGAAGACGACAGAAGCTGAGGCGAATAAGGAAAATGACACTCAAGAATCTGATGAGAA 1192
Query 885 GAAGACAGAAGCTGCAGCAAATAAGGAGAACGAAACCGAAGAATCTGATGTTAAGAAGAC 944
||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 1193 GAAGACAGAAGCTGCAGCAAATAAGGAGAACGAAACCCAAGAGTCTGATGTCAAGAAGAC 1252
Query 945 AGAAGCTGCAGCAGCAACATCAGTAGCAGAGGAGAAGAGTAACGACTTGAAGGCAGAAGA 1004
|||||||||| | || |||||||||||||||||||| |||||||||||||
Sbjct 1253 CGAAGCTGCAG--------T-AG---CAGAGGAGAAGAGTAACGACATGAAGGCAGAAGA 1300
Query 1005 CACAAACAGAAGCTTGGAGGCGAATCAAGTTCAACAGCAGCAGGGCGCTGCAGCTTCCGT 1064
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1301 CACAAACAGAAGCTTGGAGGCGAATCAAGTTCAACAGCAGCAGGGAGCTGCAGCTTCCGT 1360
Query 1065 GAGCTGTTAA 1074
||||||||||
Sbjct 1361 GAGCTGTTAA 1370
Score = 715 bits (387), Expect = 0.0
Identities = 457/489 (93%), Gaps = 12/489 (2%)
Strand=Plus/Plus
Query 1 ATGGAAAACACAGACGAACTTGTCTCCATTGAGCTACCAGCTCCTGCTTCATGGAAGAAA 60
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 216 ATGGAAAACACAGACGAGCTTGTCTCCATTGAGCTACCAGCTCCAGCTTCATGGAAGAAA 275
Query 61 CTGTTTTATCCGAAAAGAGCGGGTACTCCGAGAAAGACAGAGATTGTGTTTGTGGCTCCA 120
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 276 CTGTTTTATCCGAAAAGAGCCGGTACTCCGAGAAAGACGGAGATTGTGTTTGTGGCTCCA 335
Query 121 ACGGGTGAAGAGATCAGCTCACGGAAGCAGTTGGAACAGTACCTCAAGGCCCATCCTGGC 180
|||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 336 ACGGGTGAAGAGATTAGCTCGCGGAAGCAGTTGGAGCAGTACCTGAAGGCCCATCCTGGC 395
Query 181 AATCCTCTCATCTCTGAGTTTGAGTGGACAACTGGGGAAACTCCAAGGAGGTCTTCAAGG 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 AATCCTGTCATCTCTGAGTTTGAGTGGACAACTGGGGAAACTCCAAGGAGGTCTTCAAGG 455
Query 241 ATTAGCCAAAAGGTGAAGGCCACAACGCCTACTCCTGACAAAGAACCCCTCCTGAAGAAG 300
|| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 456 ATCAGCCAAAAGGTTAAGGCTACAACGCCTACTCCTGACAAAGAGCCCCTCCTGAAGAAG 515
Query 301 AGACGATCTTCTCTTACGAAGAAGGACAATAAGGAGGCTGCTGAGAAAAATGACGAGGCT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 516 AGACGATCTTCTCTCACGAAGAAGGACAATAAGGAGGCTGCTGAGAAAAATGAAGAGGCT 575
Query 361 GCTATGAAGGAGAACATGGATGTTGACAAGGATGGAAAGACGGAAAACGCAGAG----A- 415
||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 576 GCTGTGAAGGAGAACATGGATGTTGATAAGGATGGGAAGACGGAAAACGCAGAGGCTGAG 635
Query 416 A-GGAGAA-G-GA-GG-G--AGTGACAGAAATTGCAGAGGCAGAGAAGGAGAACAAAGAG 468
| |||||| | || || | ||||||||||||||||||||| |||||||||||||| |||
Sbjct 636 AAGGAGAAAGAGAAGGAGGGAGTGACAGAAATTGCAGAGGCGGAGAAGGAGAACAACGAG 695
Query 469 GGTGAGAAG 477
|||||||||
Sbjct 696 GGTGAGAAG 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5