BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312533

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15415.1 | Symbols:  | The protein encoded by this gene was ...   483    5e-136


> AT1G15415.1 | Symbols:  | The protein encoded by this gene was 
identified  as a part of pollen proteome by mass spec analysis. 
It has weak homology to LEA (late embryo abundant) proteins. 
 Encodes protein phosphatase 2A (PP2A) B'gamma subunit. 
 Targeted to nucleus and cytosol. | chr1:5300742-5301412 
REVERSE LENGTH=480
Length=480

 Score =  483 bits (261),  Expect = 5e-136
 Identities = 281/291 (97%), Gaps = 0/291 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGAGCGGACAGAATGAGGAGTTCAGTGTGAGGGCCGGCCAAATCGTGGGCCAAGCT  60
            ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGAGCGGACAGGATGAGGAATTCAGTGTGAGGGCCGGCCAAATCGTGGGCCAAGCT  60

Query  61   CATGTGAAGGAGAATGATTGCAACCACTCTTCTCAAGCTTCAGGTTTTCTCCAGCAGAAA  120
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  61   CATGTGAAGGAGAATGATTGCAACAACTCTTCTCAAGCTTCAGGTTTTCTCCAGCAGAAA  120

Query  121  GGGGAGAAAGTGAAGAGCATGGCACATGAAGCATCAGAGGCAGTGAAGAACAAATTGGGG  180
            ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  GGGGAGAAAGTGAAGAGTATGGCACATGATGCATCAGAGGCAGTGAAGAACAAATTGGGG  180

Query  181  ATCAACAGTGACAACAATCAAGAATATAAGAACAAGAACCCTTTGGACAAGAAGAATCCT  240
            ||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct  181  ATCAACAATGACAACAATGAAGAATATAAGAACAAAAACCCTTTGGACAAGAAGAACCCT  240

Query  241  AACAACACAACCAGTCCAAGCATGCCTGGTCATCCTCCTTCCGATATCTAA  291
            ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  241  AACAACACAACCAGTCCAAGCATGCCTGGTCATCCTCCTTCAGATATCTAA  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5