BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg312551 Length=582 Score E Sequences producing significant alignments: (Bits) Value AT1G15600.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 512 1e-144 > AT1G15600.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15620.1); Has 227 Blast hits to 227 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5368923-5370344 FORWARD LENGTH=1246 Length=1246 Score = 512 bits (277), Expect = 1e-144 Identities = 340/370 (92%), Gaps = 5/370 (1%) Strand=Plus/Plus Query 166 AACATCCACAAACACTATTGTTTATATGGATCATCGGGTTATACTTGTGGCTGTATCGCC 225 |||||||||||||| | |||| ||||||||||||| |||||||| ||||||||||| ||| Sbjct 212 AACATCCACAAACAATGTTGTCTATATGGATCATC-GGTTATACATGTGGCTGTATTGCC 270 Query 226 ACTCTCCCTATCCTATGTTGGCGTTTTTGGCTTTATAACCGAAGTGTTGGCCCCGAATCT 285 |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 271 ACTCTCCCTATCCTATGTTGGCGTTTTTGGCTTTATAACCGAAGCGTTGGCTCCGAATCT 330 Query 286 ATAGAAGAACACTTAAGAGAGAAAAGAATCAACAAGGATTTGGACTTTTTTATGATGTGT 345 | ||| ||| |||||||||||| |||||||||||||||| ||||||||||||||| | || Sbjct 331 ACAGATGAATACTTAAGAGAGACAAGAATCAACAAGGATATGGACTTTTTTATGACGGGT 390 Query 346 TTCTTCGTGGGTTGGTTTGTGGtttttttATGGATT-TTATCTTCCATAGCATTCAACTC 404 |||||||||||||||| |||||| |||||||||||| || ||||||| ||||||| |||| Sbjct 391 TTCTTCGTGGGTTGGTATGTGGTGTTTTTATGGATTCTT-TCTTCCAAAGCATTCGACTC 449 Query 405 ATCAGCTCTAGATGATACTACTACTCAATTCTTCTGGTTATGTTTGGCTCTCCTTACTTT 464 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 450 ATCAGCTCTAGATGATACTACAACTCAATACTTCTGGTTATGTTTGGCTCTCCTTACTTT 509 Query 465 CAGTTGCATTAGATATGTAATTTTTAATCTAACATTGGCAATGGTCTGTTACACCTG-TC 523 |||||||||||||||||| ||||||||||||||||||||||||||||||| || | || Sbjct 510 CAGTTGCATTAGATATGTTCTTTTTAATCTAACATTGGCAATGGTCTGTTATAC-TACTC 568 Query 524 CTATGCTTTT 533 || ||||||| Sbjct 569 CTTTGCTTTT 578 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27980419879 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5