BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312551

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15600.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   512    1e-144


> AT1G15600.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G15620.1); 
Has 227 Blast hits to 227 proteins in 15 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5368923-5370344 
FORWARD LENGTH=1246
Length=1246

 Score =  512 bits (277),  Expect = 1e-144
 Identities = 340/370 (92%), Gaps = 5/370 (1%)
 Strand=Plus/Plus

Query  166  AACATCCACAAACACTATTGTTTATATGGATCATCGGGTTATACTTGTGGCTGTATCGCC  225
            |||||||||||||| | |||| ||||||||||||| |||||||| ||||||||||| |||
Sbjct  212  AACATCCACAAACAATGTTGTCTATATGGATCATC-GGTTATACATGTGGCTGTATTGCC  270

Query  226  ACTCTCCCTATCCTATGTTGGCGTTTTTGGCTTTATAACCGAAGTGTTGGCCCCGAATCT  285
            |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct  271  ACTCTCCCTATCCTATGTTGGCGTTTTTGGCTTTATAACCGAAGCGTTGGCTCCGAATCT  330

Query  286  ATAGAAGAACACTTAAGAGAGAAAAGAATCAACAAGGATTTGGACTTTTTTATGATGTGT  345
            | ||| ||| |||||||||||| |||||||||||||||| ||||||||||||||| | ||
Sbjct  331  ACAGATGAATACTTAAGAGAGACAAGAATCAACAAGGATATGGACTTTTTTATGACGGGT  390

Query  346  TTCTTCGTGGGTTGGTTTGTGGtttttttATGGATT-TTATCTTCCATAGCATTCAACTC  404
            |||||||||||||||| |||||| |||||||||||| || ||||||| ||||||| ||||
Sbjct  391  TTCTTCGTGGGTTGGTATGTGGTGTTTTTATGGATTCTT-TCTTCCAAAGCATTCGACTC  449

Query  405  ATCAGCTCTAGATGATACTACTACTCAATTCTTCTGGTTATGTTTGGCTCTCCTTACTTT  464
            ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct  450  ATCAGCTCTAGATGATACTACAACTCAATACTTCTGGTTATGTTTGGCTCTCCTTACTTT  509

Query  465  CAGTTGCATTAGATATGTAATTTTTAATCTAACATTGGCAATGGTCTGTTACACCTG-TC  523
            ||||||||||||||||||  ||||||||||||||||||||||||||||||| || |  ||
Sbjct  510  CAGTTGCATTAGATATGTTCTTTTTAATCTAACATTGGCAATGGTCTGTTATAC-TACTC  568

Query  524  CTATGCTTTT  533
            || |||||||
Sbjct  569  CTTTGCTTTT  578



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5