BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312580

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15900.1 | Symbols:  | unknown protein; Has 19 Blast hits to...   510    3e-144


> AT1G15900.1 | Symbols:  | unknown protein; Has 19 Blast hits 
to 19 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa 
- 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes 
- 2 (source: NCBI BLink). | chr1:5464356-5464697 FORWARD 
LENGTH=342
Length=342

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 321/343 (94%), Gaps = 2/343 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGACGCAATTTCATGGCGGCGAAGAAGAAGATCCTTGGCTCGCTGC-AGACAAAGT  59
            |||||||||||||||||||||||||| | ||||||||||||||| ||| | ||||||| |
Sbjct  1    ATGGAGACGCAATTTCATGGCGGCGATGGAGAAGATCCTTGGCTAGCT-CGAGACAAACT  59

Query  60   CTACCATGTAGTATTCTGCTtctccatctctcttctcctctctactctcgcctctctctc  119
             ||||||||| ||||||||||||| ||||||||| || ||||||||||||||||| ||||
Sbjct  60   ATACCATGTAATATTCTGCTTCTCAATCTCTCTTATCTTCTCTACTCTCGCCTCTTTCTC  119

Query  120  ACGCTACTCCTTTCTACGCCGTCACTCCATCTGGATCGGATCTGCTTTCTCAGTCGCCGC  179
             ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  120  CCGCTACTCCTTTCTACGCCGTCACTCCATCTGGATCGGATCTGCTTTCTCACTCGCCGC  179

Query  180  CGGTGCGGCAAAAGAAGCTGCCGATCAATTTGGTATCTTCCCTTCCGCAGGTGCTTCCGC  239
            ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct  180  CGGTGCGGCTAAAGAAGCTGCCGATCAAATTGGTATCTTCCCTTCCGCAGGTGCTTCCGT  239

Query  240  TAGAGACGCCGTCGCGGACGCCATTGGAGTTGTGATCGCTGCTTTGGTTATCTTCCTCTG  299
            |||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct  240  TAGAGACGCCGTCGCGGACGCCATTGGAGTTGTGATAGCTGCTTTGGTTCTCCTCCTCTG  299

Query  300  GAAATCTCGCCGATCACGTACCCGACCCATCCTTCCGATTTGA  342
            |||||||||  ||||||||||||||||||||||||||||||||
Sbjct  300  GAAATCTCGAAGATCACGTACCCGACCCATCCTTCCGATTTGA  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15985144182


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5