BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312582
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15920.2 | Symbols: | Polynucleotidyl transferase, ribonucl... 1103 0.0
> AT1G15920.2 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr1:5469389-5471149 FORWARD
LENGTH=1629
Length=1629
Score = 1103 bits (597), Expect = 0.0
Identities = 777/864 (90%), Gaps = 12/864 (1%)
Strand=Plus/Plus
Query 1 ATGTCGCAGGTTTCGAATCCAGAAGAAGAAGACGATACGATTGAAATCCGCGAGGTCTGG 60
|||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 442 ATGTCGCAGGCTCCGAATCCAGAAGAAGAAGACGACACGATTGAAATCCGCGAGGTCTGG 501
Query 61 AACCATAATCTTGAAGAAGAGATGGCTCTGATTGAACAAGCCATTGACGATTTCCCTTAC 120
|||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 502 AACCATAACCTTGAACAAGAGATGGCTCTGATTGAACAATCCATCGACGATTTCCCTTAC 561
Query 121 GTCGCCATGGACACAGAGTTCCCAGGAGTCGTTTGCAAGACAGTAACGGCGAATCCAAAC 180
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 562 GTAGCCATGGACACAGAGTTCCCAGGAATCGTTTGCAAGACAGTAACGGCGAATCCAAAC 621
Query 181 CCAAACCC-TA----A-ACACTACGAATTCAACTACGAAACCTTGAAGACGAATGTGAAC 234
|||||||| || | ||||||||||| ||||||||| ||||||||| |||| |||||
Sbjct 622 CCAAACCCATACTCTATACACTACGAATACAACTACGATACCTTGAAGGCGAACGTGAAT 681
Query 235 ATGCTTAAGTTGATTCAGCTAGGTCTCACGTTATCAGATGAGAAAGGAAACTTACCAACC 294
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 682 ATGCTCAAGTTGATTCAGCTCGGTCTCACCTTATCAGATGAGAAAGGAAACTTACCAACC 741
Query 295 TGTGGAACTAACAAGCAATGCATCTGGCAGTTCAATTTCAGAGAATTCAATTTCAAATCC 354
|||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||
Sbjct 742 TGTGGAACCAACAAGCAATGCATCTGGCAATTCAATTTCAGAGAATTCAATGTCATATCC 801
Query 355 GACATGTTTGCCATGGATTCCATCCAACTCCTGCGTAAGTCATACATCGATTTGGAGAAA 414
|||||||| ||| ||||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct 802 GACATGTTCGCCTTGGATTCCATCGAACTCCTCCGTAAGTCAGCCATCGATTTGGAGAAG 861
Query 415 AACACCGAATGCGGTGTAGATTCGAGGCGATTCGCTGAGCTTCTAATGAGTTCAGGAGTA 474
|||| ||||||||||||||| | | | ||||||| |||||||||||| |||||||||||
Sbjct 862 AACAACGAATGCGGTGTAGACGCAAAGAGATTCGCAGAGCTTCTAATGGGTTCAGGAGTA 921
Query 475 GTGCTTAACGACAAGATACAGTGGGTGACATTCCATTGCGGATATGATTTTGGATACTTG 534
||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 922 GTGCTAAACGATAAGATACATTGGGTGACATTCCATTGCGGATACGATTTTGGGTACTTG 981
Query 535 CTGAAACTCTTGTCCGGGAAAGAATTGCCGGCGGAGGCGTCCAAGTTCTTTGATCAGGTG 594
|||||||||||||| |||||||||||||||| |||| || | |||||||||||| ||
Sbjct 982 CTGAAACTCTTGTCAGGGAAAGAATTGCCGGAGGAGATATCGGACTTCTTTGATCAGATG 1041
Query 595 GAG-CGTTTTTTCCCGGTAGTGTATGATATCAAATACTTGATGGGATTCTGCGCCCCA-C 652
||| | |||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 1042 GAGAAG-TTTTTCCCGGTAGTGTATGATATCAAATACTTGATGGGATTCTG-TACTAACC 1099
Query 653 TCCATGGAAGTCTGGGGAGAGTAGCAAAATTACTTGGTGTTAAAAGAGTTGGGATTTCTC 712
|| ||||| |||||| || | |||| | ||||||||||||||| |||||||||||||||
Sbjct 1100 TCTATGGAGGTCTGGAGAAAATAGCGGAGTTACTTGGTGTTAAACGAGTTGGGATTTCTC 1159
Query 713 ACCAGGCTGGATCAGATAGCTTGTTAACATTGCGTGCCTTCAACAAGATGAAAGAGATCT 772
|||||||||||||||||||||||||||| |||||| | |||| ||||||||||||| |||
Sbjct 1160 ACCAGGCTGGATCAGATAGCTTGTTAACGTTGCGTACTTTCATCAAGATGAAAGAGTTCT 1219
Query 773 TCTTCACTGGTTCTCTGGA-CAAATACTCTGGTTTTTTGTATGGATTAGATAATCCTCGG 831
||||||||||||| || | ||| || ||||||||||||| |||||||||||||||||||
Sbjct 1220 TCTTCACTGGTTC-CTTGCTCAAGTATTCTGGTTTTTTGTTTGGATTAGATAATCCTCGG 1278
Query 832 TTGCTCACTGGAACCAAAAATTAA 855
|||||||||||| |||||||||||
Sbjct 1279 TTGCTCACTGGATCCAAAAATTAA 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5