BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312583

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15930.2 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd...   544    3e-154


> AT1G15930.2 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family protein | chr1:5471400-5473014 FORWARD LENGTH=825
Length=825

 Score =  544 bits (294),  Expect = 3e-154
 Identities = 342/365 (94%), Gaps = 4/365 (1%)
 Strand=Plus/Plus

Query  1    ATGGACTTAATGACTGCTTTGGAGTTGACTCTTAGGAAAGCTCGTGCTTATGGTGGTGTT  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  190  ATGGACTTAATGACTGCATTGGAGTTGACTCTTAGGAAAGCTCGTGCTTATGGTGGTGTT  249

Query  61   GTCCGTGGTCTTCATGAGAGTGCTAAGCTTATTGAGAAGCGTGTGGCTCAGCTCTG-TGT  119
            || |||||||| |||||| ||||||||||||||||||||||||||||||| ||| | |||
Sbjct  250  GTTCGTGGTCTCCATGAGTGTGCTAAGCTTATTGAGAAGCGTGTGGCTCAACTC-GTTGT  308

Query  120  CTTGGCTGAAGACTGCAACCAGCCTGATTACGTCAAGCTTGTTAAAGCTCTCTGTGCTGA  179
            |||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct  309  CTTGGCTGAAGACTGCAACCAGCCTGATTATGTCAAGCTTGTGAAGGCTCTCTGTGCTGA  368

Query  180  TCACAGCA-TCAGTTTGCTTACAGTTCCAAGTGCCAAGACCCTTGGCGAATGGGCTGGTC  238
            |||| | | |||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  369  TCAC-GAAGTCAGGTTGCTAACAGTTCCAAGTGCCAAGACCCTTGGCGAATGGGCTGGTC  427

Query  239  TCTGCAAGATTGATTCTGAGGGCAATGCCAGGAAGGTTGTTGGGTGCTCATGTCTTGTTG  298
            |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct  428  TCTGCAAGATTGATTCTGAGGGTAATGCCAGGAAGGTTGTTGGATGCTCATGTCTTGTTG  487

Query  299  TCAAGGACTACGGCGAGGAGACAACTGCCCTCAATATTGTCAAGAAGCATATTGATTCCC  358
            ||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||| ||| |
Sbjct  488  TCAAGGACTTCGGCGAGGAGACAACTGCCCTCAGTATCGTCAATAAGCATATTGCTTCTC  547

Query  359  AATAA  363
            |||||
Sbjct  548  AATAA  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5