BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312599
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16190.1 | Symbols: RAD23A | Rad23 UV excision repair protei... 1624 0.0
AT1G79650.4 | Symbols: RAD23B | Rad23 UV excision repair protei... 680 0.0
> AT1G16190.1 | Symbols: RAD23A | Rad23 UV excision repair protein
family | chr1:5543152-5546103 FORWARD LENGTH=1433
Length=1433
Score = 1624 bits (879), Expect = 0.0
Identities = 1035/1109 (93%), Gaps = 16/1109 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCTCACCGTTAAGACTCTCAAGGGTAGCCATTTCGAAATTAGAGTTCAGCCCACC 60
||||||||||| |||||||||||||||||||||||||| || ||||| |||| ||||||
Sbjct 116 ATGAAGCTCACTGTTAAGACTCTCAAGGGTAGCCATTTTGAGATTAGGGTTCTTCCCACC 175
Query 61 GACACGATAATGGCAGTGAAGAAGAATATTGAAGATTCACAAAGCAAAGACAACTATCCT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GACACGATAATGGCGGTGAAGAAGAATATTGAAGATTCACAAAGCAAAGACAACTATCCT 235
Query 121 TGTGGACAGCAGTTGCTGATTCACAATGGCAAA-GTTTTGAAAGATGAAACTACTTTGGT 179
||||| ||||| || |||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 236 TGTGGGCAGCAATTACTGATTCACAATGG-AAAGGTTTTGAAAGATGAAACTACCTTGGT 294
Query 180 GGAGAACAAGGTTACCGAAGAAGGTTTTCTTGTCGTCATGCTTAGCAAGAGCAAAACTGC 239
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 295 GGAGAACAAGGTTACCGAGGAGGGTTTTCTTGTCGTGATGCTTAGCAAGAGCAAAACTGC 354
Query 240 AAGTTCAGCTGGTCCCTCTTCCACTCAACCTACTTCTACCACGACATCTACCATATCTTC 299
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 355 AAGTTCAGCTGGTCCCTCTTCTACTCAGCCTACTTCTACCACGACATCTACCATATCTTC 414
Query 300 AACCCCGCTTGCAG---C-T-------CC-GTCTATAGCTGTGCCAGCTTCAAATTCTAC 347
|||| ||||||||| | | || |||||| |||||||| ||||||||||||||
Sbjct 415 AACCACGCTTGCAGCTCCGTCGACAACCCAGTCTATTGCTGTGCCGGCTTCAAATTCTAC 474
Query 348 TCCTGTTCAAGAACAGCTGCCGGCACAAAGTGACACCTATGGTCAAGCTGCTTCAACTTT 407
||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TCCCGTTCAAGAACAACCAACGGCACAAAGTGACACCTATGGTCAAGCTGCTTCAACTTT 534
Query 408 AGTTAGTGGCAGTAGTGTTGAGCAGATGGTACAACAAATAATGGAAATGGGGGGAGGCAG 467
|||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 535 AGTTAGTGGCAGTAGTATTGAGCAAATGGTTCAACAAATAATGGAAATGGGAGGAGGCAG 594
Query 468 CTGGGACAAAGAAACAGTTACTCGTGCACTTCGTGCAGCGTATAACAATCCTGAGAGAGC 527
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 595 TTGGGACAAAGAAACGGTTACTCGTGCACTTCGTGCAGCATATAACAACCCTGAGAGAGC 654
Query 528 AGTGGATTATCTATATTCTGGAATTCCCGAAACAGTAGCCATTCCAGCAACTAATTTATC 587
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 655 AGTGGATTATCTATATTCTGGAATTCCTGAAACAGTAACCATTCCAGCAACTAATTTATC 714
Query 588 TGGAGTAGGATCTGGT-GCAGAACTTACAGCTCCTCCTGCCTCTGGAGGACCTAATTCAT 646
|||||||||||||||| | ||||||||| ||||||||| |||||||||| ||||||||||
Sbjct 715 TGGAGTAGGATCTGGTAG-AGAACTTACTGCTCCTCCTCCCTCTGGAGGCCCTAATTCAT 773
Query 647 CTCCTTTGGATTTGTTTCCCCAGGAAGCAGTTTCTGATGCTGGAGGTGGAGATCTTGGAA 706
||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 774 CTCCTCTGGATTTGTTTCCCCAGGAAGCAGTTTCTGATGCAGCAGGTGGAGATCTTGGAA 833
Query 707 CGCTTGAATTCCTCAGAGGCAATGATCAGTTCCAACAATTACGCTCCATGGTCAATTCCA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CGCTTGAATTCCTCAGAGGCAATGATCAGTTCCAACAATTACGCTCCATGGTCAATTCCA 893
Query 767 ACCCCCAGATTCTGCAGCCTATGCTTCAAGAGCTCGGAAAACAGAACCCTCAACTTCTGA 826
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 894 ACCCCCAGATTCTGCAGCCTATGCTTCAAGAGCTCGGAAAGCAGAACCCCCAACTTCTGA 953
Query 827 GGCTAATTCAAGAGAACCAAGCAGAATTTCTTCAGTTACTAAACGAGCCCTATGAAGGAT 886
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 954 GGCTAATTCAAGAGAACCAAGCCGAATTTCTTCAGTTACTAAACGAGCCCTACGAAGGAT 1013
Query 887 CTGACGGGGATATGGATATTTTCGACCAACCCGAGCAAGAAATGCCCCACGCAGTCAACG 946
||||||||||| ||||||| ||||| ||||| || ||||||||||||||| |||||||||
Sbjct 1014 CTGACGGGGATGTGGATATCTTCGATCAACCTGATCAAGAAATGCCCCACTCAGTCAACG 1073
Query 947 TTACCCCTGAAGAGCAAGAAGCGATTCAACGGCTTGAGGCAATGGGGTTTGATAGAGCAC 1006
|||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 1074 TTACCCCTGAAGAGCAAGAATCAATTGAACGGCTTGAGGCAATGGGGTTTGATAGAGCAA 1133
Query 1007 TAGTCATAGAAGCATTCCTTGCATGTGACCGTAACGAGGAATTGGCTGCAAACTATCTGC 1066
||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 1134 TAGTCATAGAAGCCTTCCTTTCCTGTGACCGTAACGAGGAATTGGCTGCAAACTATCTAC 1193
Query 1067 TAGAGCACTCAGCAGATTTTGAAGACTGA 1095
|||||||||||||||||||||||||||||
Sbjct 1194 TAGAGCACTCAGCAGATTTTGAAGACTGA 1222
> AT1G79650.4 | Symbols: RAD23B | Rad23 UV excision repair protein
family | chr1:29972108-29975281 REVERSE LENGTH=1635
Length=1635
Score = 680 bits (368), Expect = 0.0
Identities = 618/738 (84%), Gaps = 19/738 (3%)
Strand=Plus/Plus
Query 369 GGCACAAAGTGACACCTATGGTCAAGCTGCTTCAACTTTAGTTAGTGGCAGTAGTGTTGA 428
|||||| | |||||||||||| |||||||| ||||| ||||||||||| |||||| ||||
Sbjct 608 GGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAGTAGTCTTGA 667
Query 429 GCAGATGGTACAACAAATAATGGAAATGGGGGGAGGCAGCTGGGACAAAGAAACAGTTAC 488
||| ||||| ||||| |||||||||||||| || || || ||||||||||||||||||||
Sbjct 668 GCAAATGGTCCAACAGATAATGGAAATGGGAGGTGGAAGTTGGGACAAAGAAACAGTTAC 727
Query 489 TCGTGCACTTCGTGCAGCGTATAACAATCCTGAGAGAGCAGTGGATTATCTATATTCTGG 548
|||||||||||||||||| |||||||| ||||||||||||||||||||| | || |||||
Sbjct 728 TCGTGCACTTCGTGCAGCTTATAACAACCCTGAGAGAGCAGTGGATTATTTGTACTCTGG 787
Query 549 AATTCC-CGAAA---C---AGTAGCCATTCCAGCAACTAATTTATCTGGA--GTAGGATC 599
|||||| | ||| | |||||| | |||| | || | || || | ||||||
Sbjct 788 AATTCCTC-AAACTGCTGAAGTAGCTGTGCCAGTACCTGA-GGCTC-AGATTGCAGGATC 844
Query 600 TGGTGCAGAACTTACAGCTCCTCCTGCCTCTGGAGGACCTAATTCATCTCCTTTGGATTT 659
||||||| | | | | | ||||| |||||||||||||| |||||||||||||||||
Sbjct 845 CGGTGCAG--C-CCCTGTTGCACCTGCATCTGGAGGACCTAACTCATCTCCTTTGGATTT 901
Query 660 GTTTCCCCAGGAAGCAGTTTCTGATGCTGGAGGTGGAGATCTTGGAACGCTTGAATTCCT 719
||||| |||||| ||||| ||| |||||| |||||||||||| || |||||||| ||
Sbjct 902 ATTTCCTCAGGAAACAGTTGCTGCTGCTGGCTCTGGAGATCTTGGGACACTTGAATTTCT 961
Query 720 CAGAGGCAATGATCAGTTCCAACAATTACGCTCCATGGTCAATTCCAACCCCCAGATTCT 779
||| |||||| |||||||||||||||||| |||||||| |||||||||| || |||||
Sbjct 962 TAGAAACAATGACCAGTTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCT 1021
Query 780 GCAGCCTATGCTTCAAGAGCTCGGAAAACAGAACCCTCAACTTCTGAGGCTAATTCAAGA 839
||||| |||||||| || || ||||| || |||||||||||||||||||||||||||||
Sbjct 1022 TCAGCCCATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGA 1081
Query 840 GAACCAAGCAGAATTTCTTCAGTTACTAAACGAGCCCTATGAAGGATCTGACGGGGATAT 899
||||| ||||| |||||||||||| |||| ||||||||||| || |||||||||||
Sbjct 1082 AAACCAGGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGGGTTCTGACGGGGAGGG 1141
Query 900 GGATATTTTCGACCAACCCGAGCAAGAAATGCCCCACGC-AGTCAACGTTACCCCTGAAG 958
||| || ||||| |||||||||||||||||||| || || | | ||||||||||| | ||
Sbjct 1142 GGACATGTTCGATCAACCCGAGCAAGAAATGCCACATGCCATT-AACGTTACCCCAGCAG 1200
Query 959 AGCAAGAAGCGATTCAACGGCTTGAGGCAATGGGGTTTGATAGAGCACT-AGTCATAGAA 1017
| |||||||||||||||||||| ||||||||||| ||||||||||| || ||| ||||||
Sbjct 1201 AACAAGAAGCGATTCAACGGCTCGAGGCAATGGGATTTGATAGAGC-CTTAGTAATAGAA 1259
Query 1018 GCATTCCTTGCATGTGACCGTAACGAGGAATTGGCTGCAAACTATCTGCTAGAGCACTCA 1077
|| ||||| ||||||||||| || || |||||||| || |||||||| | ||| |||||
Sbjct 1260 GCGTTCCTCGCATGTGACCGAAATGAAGAATTGGCAGCTAACTATCTATTGGAGAACTCA 1319
Query 1078 GCAGATTTTGAAGACTGA 1095
| || ||||||||||||
Sbjct 1320 GGTGACTTTGAAGACTGA 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5