BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312603
Length=2208
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16260.1 | Symbols: | Wall-associated kinase family protein... 1714 0.0
> AT1G16260.1 | Symbols: | Wall-associated kinase family protein
| chr1:5559579-5562113 REVERSE LENGTH=2387
Length=2387
Score = 1714 bits (928), Expect = 0.0
Identities = 1241/1392 (89%), Gaps = 22/1392 (2%)
Strand=Plus/Plus
Query 828 AGATGGATATCAGTGTTGGTGTAAAC-ATGGTTATGAAGGAAATCCTTATATACCTGGTG 886
|||| | ||||| |||| |||| || ||||||| ||||||||||| || |||||||| |
Sbjct 878 AGATAGCTATCAATGTTCGTGT-CACAATGGTTACGAAGGAAATCCCTACATACCTGGCG 936
Query 887 GATGTCAAGACATTGATGAATGCAGATATTCATATC-ACAATAAATGTGGAAAGA-ACAA 944
|||| ||||||||||||||||||||| || || ||| | |||||||||||||||| | ||
Sbjct 937 GATGCCAAGACATTGATGAATGCAGAGATCCACATCTA-AATAAATGTGGAAAGAGA-AA 994
Query 945 GTGTGTGAATGTGTCT-GGATCAT-TCAAATGTGAGAAAACTTGGCCAGCCATTTTAAGT 1002
|||||||||||| ||| ||||||| | | |||||||||||||||||||||||||||||||
Sbjct 995 GTGTGTGAATGT-TCTCGGATCATAT-AGATGTGAGAAAACTTGGCCAGCCATTTTAAGT 1052
Query 1003 GGAACACTAAG-TACTGGATTGTTGCT-TTTAGTCGTTGGAACGTGGTGGCTATGCAAGG 1060
||||| ||||| | ||||||||||||| | | || |||| | ||||| |||||||||||
Sbjct 1053 GGAACTCTAAGCT-CTGGATTGTTGCTCCTGA-TCTTTGGTATGTGGTTGCTATGCAAGG 1110
Query 1061 TTAATAAAAAGCGGAAA-TCAGCCAAGCAGAAAAGAAAATTCTT-CAAACGAAACGGAGG 1118
||||| |||||||||| | |||||||||||| || || ||||| |||| |||| |||||
Sbjct 1111 CTAATAGAAAGCGGAAAGT-AGCCAAGCAGAAGAGGAAGTTCTTCCAAA-GAAATGGAGG 1168
Query 1119 TTTGTTGTTACAACAACAGACATCGTTCCTTCAAGGCAGTGTCAATAGAACCAAAGTGTT 1178
||||||||| || ||||| ||||| |||||||| || ||||| |||||||||||||| ||
Sbjct 1169 TTTGTTGTTGCAGCAACAAACATCCTTCCTTCACGGAAGTGTAAATAGAACCAAAGTTTT 1228
Query 1179 CAGCTCCGATGACCTTAACAAGGCAACTGACAAATTCAACCCTAGTAGAATACTGGGACA 1238
||||||| ||||||| | || ||||| || | |||||| | || ||||||||||| ||
Sbjct 1229 CAGCTCCAATGACCTGGAGAATGCAACAGATAGATTCAATGCGAGCAGAATACTGGGGCA 1288
Query 1239 AGGAGGCCAAGGTACAGTTTATAAGGGAATGTTGGAAGATGGGATGATCGTCGCTGTCAA 1298
||| || || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1289 AGGCGGGCAGGGTACAGTTTATAAAGGAATGTTGGAAGATGGGATGATCGTCGCTGTCAA 1348
Query 1299 AAAGTCCAAAGCATTGGAAGAAAAGAATCTTGAGGAATTCATCAATGAGATAATCCTTCT 1358
||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 1349 GAAGTCCAAAGCATTGAAAGAAGAGAATCTTGAGGAATTCATCAATGAGATCATCCTTTT 1408
Query 1359 GTCACAGATTAACCACCGAAATGTTGTCAAGATTTTAGGATGTTGTCTTGAGACAGAGGT 1418
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1409 GTCACAGATTAACCACCGAAATGTTGTCAAGATCTTAGGATGTTGTCTTGAGACAGAAGT 1468
Query 1419 ACCTGTGTTAGTGTATGAGTTCATTCCAAACAGAAACCTTTTCGATCATCTTCAAAACCC 1478
|||| | || ||||||||||||||||| ||| | |||||||||||||||||||| |||||
Sbjct 1469 ACCTATATTGGTGTATGAGTTCATTCCTAACCGTAACCTTTTCGATCATCTTCACAACCC 1528
Query 1479 ATCAGAGGATTTCCCAATGACTTGGGAAGTCCGTCTCTGCATCGCCTGCGAAGTCGCAGA 1538
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||
Sbjct 1529 ATCAGAGGATTTCCCAATGAGTTGGGAAGTCCGTCTCTGCATCGCCTGTGAAGTCGCCGA 1588
Query 1539 TGCCCTCTCCTACCTGCATTCAGCCGCCTCTATACCAATTTACCACAGGGATGTCAAGTC 1598
|||||||||||||||||||||||||| |||||| || ||||| ||||| |||||||||||
Sbjct 1589 TGCCCTCTCCTACCTGCATTCAGCCGTCTCTATCCCCATTTATCACAGAGATGTCAAGTC 1648
Query 1599 AACAAATATCTTATTGGATGAAAGGCACCGAGCAAAAGTGTCAGATTTTGGAATTTCGAG 1658
||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 1649 AACAAATATCTTATTGGATGAAAAGCACCGTGCAAAAGTGTCAGATTTTGGAATCTCGAG 1708
Query 1659 ATCAGTTGCTATAGATGACACTCACTTGACAACAGTAGTGCAGGGAACAATTGGATATGT 1718
||| |||||||||||||| ||||||||||||||| | || || |||||||||||||||||
Sbjct 1709 ATCTGTTGCTATAGATGATACTCACTTGACAACAATTGTACAAGGAACAATTGGATATGT 1768
Query 1719 AGACCCAGAGTACCTTCAGTCAAGCCACTTCACAGGGAAGAGCGATGTCTACAGCTATGG 1778
||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |||
Sbjct 1769 AGACCCAGAGTACCTTCAGTCAAACCACTTCACAGGGAAGAGTGACGTCTACAGCTTTGG 1828
Query 1779 GGTTTTGCTCATTGAGCTCTTAACCGGAGAGAAACCTGTCTCCCTTCTGAGGCGCCAAGA 1838
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1829 GGTTTTGCTCATTGAGCTCTTAACCGGAGAGAAACCTGTCTCCCTTCTGAGACGGCAAGA 1888
Query 1839 AGTCAGGATGTTGGGTGCCTACTTCCTCGAAGCCATGAGAAATGATAGGCTTCACGAGAT 1898
|||| | ||||||||||| |||||||||||||||||||||||||| || ||||| || ||
Sbjct 1889 AGTCCGAATGTTGGGTGCTTACTTCCTCGAAGCCATGAGAAATGACAGACTTCATGAAAT 1948
Query 1899 TCTTGATGCTCGCATCAAGGAGGAATGCAATCAAGAGGAGGTCCTTTCAGTAGCCAACCT 1958
||| ||||||||||||||||||||||| ||| ||| ||||||||| |||||||||| ||
Sbjct 1949 TCTCGATGCTCGCATCAAGGAGGAATGTGATCGAGAAGAGGTCCTTGCAGTAGCCAAACT 2008
Query 1959 GGCAAGAAGGTGTTTGAGCTTGAACTCAGAACATCGCCCTACCATGAGAGATGTTTTTAT 2018
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2009 TGCAAGAAGGTGTTTGAGCTTGAACTCAGAACATCGCCCTACCATGAGAGACGTATTTAT 2068
Query 2019 TGAACTGGATAGGATGCAATCCAAGAAAAAAGGCATTCAAAGCCGAA-CTCAGAATGATG 2077
|||||| |||||||||||||| |||| |||||| | |||||||| || | ||||||| ||
Sbjct 2069 TGAACTAGATAGGATGCAATCTAAGAGAAAAGGTACTCAAAGCC-AAGCACAGAATGGTG 2127
Query 2078 AAGAGCATGGGCACATTCGGATTGCAATGCCCGAATCTATGTCACTCCTTTACTCTTCTC 2137
||||||||| ||||| | ||| |||||||| || ||||||||||| |||||||||||
Sbjct 2128 AAGAGCATGCACACATCCAGATCGCAATGCCGGAGTCTATGTCACTTAGTTACTCTTCTC 2187
Query 2138 CGGACATAGTCATTGAAAACAGCTCATTCTCACTGGA-ATCAGAACCACTCATGCTTCAC 2196
|| |||||||| |||||||||||||||||||| |||| | || ||||||| |||| ||||
Sbjct 2188 CGAACATAGTCGTTGAAAACAGCTCATTCTCATTGGACA-CAAAACCACTAATGCCTCAC 2246
Query 2197 AAGACACAGTGA 2208
||||||||||||
Sbjct 2247 AAGACACAGTGA 2258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109537589190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5