BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312606
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16290.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2206 0.0
> AT1G16290.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s:
Lytic transglycosylase-like, catalytic (InterPro:IPR008258);
Has 171 Blast hits to 155 proteins in 40 species: Archae -
0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses
- 0; Other Eukaryotes - 62 (source: NCBI BLink). | chr1:5570753-5573538
REVERSE LENGTH=1445
Length=1445
Score = 2206 bits (1194), Expect = 0.0
Identities = 1319/1378 (96%), Gaps = 13/1378 (1%)
Strand=Plus/Plus
Query 1 ATGGCCAACAGTTTCACGTTCTGGAATGATTGTGTTGAGCCAGAGGATTTAGAAGAAATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCAACAGTTTCACGTTCTGGAATGATTGTGTTGAGCCAGAGGATTTAGAAGAAATG 60
Query 61 TGGATGGATCCTGCGGTCAGTGCTGAATGGATTGATGTTGGAGAGACTAAAGGCCAGAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGATGGATCCTGCGGTCAGTGCTGAATGGATTGATGTTGGAGAGACTAAAGGCCAGAAG 120
Query 121 GTTCACCTTTCAAGGGATCCTGATGGACAGCCTTATCTTACACAGACCGAGATGAGGGCT 180
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GTTCACCTCTCAAGGGATCCTGATGGTCAGCCTTATCTTACACAGACCGAGATGAGGGCT 180
Query 181 GTTGCTGATATTACTGTCCGGAGGCATTTTGATTCGATCTTGGATTTGGAAATGATATGC 240
||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 181 GTTTCTGATATAACTGTCCGGAGGCATTTTGATTCCATCTTGGATTCGGAAATGATATGT 240
Query 241 GCAATTGCTGAGCTTGAAAGTGACCGCAAGCCTCTCATTATGAGGTACAACAAAAAGACC 300
|||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||
Sbjct 241 GCAATTGCTGAGCTTGAAAGTGACCGAAAGCCTCTCATTATGCGGTACAGCAAAAAGACC 300
Query 301 AAAGAAACTGGCCTAGGAATTTTACAAGTTTTCGAAAAGACAGCAGCGTGGTTGGCTGGG 360
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AAAGAAACTGGCCTTGGAATTTTACAAGTTTTCGAAAAGACAGCAGCATGGTTGGCTGGG 360
Query 361 GGCCAGGGCTATCAGGCATATAATGTGGATGACAATCCTGATCTTCTTCACAAGCCCTTT 420
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GGCCAAGGCTATCAGGCATATAATGTAGATGACAATCCTGATCTTCTTCACAAGCCCTTT 420
Query 421 ATAAATGTATATTTTGGGGCAGCTTACCTGAAATGGTTAACAGACTATCAGAATAACCAG 480
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATAAATGTGTACTTTGGGGCAGCTTACCTGAAATGGTTAACAGACTATCAGAATAACCAG 480
Query 481 AGAAGTGAAGAGTTTGTTGTCAGAGCATATAATGGTGGGACAAAAAAGGCGACTCACAAG 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 AGAAGTGAAGAGTTTGTTGTCAGAGCATACAATGGTGGGACAAAAAAGGCGACTCACAAG 540
Query 541 TCGACATTGCCATATTGGAAACGATACCTTGCAGTGAAAGAAAGTCTCCCTTCAAGAAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCGACATTGCCATATTGGAAACGATACCTTGCAGTGAAAGAAAGTCTCCCTTCAAGAAAA 600
Query 601 CATGTCGATGCTGGCCCTTCAAGCTTTCATCCTACGAATCCCGCTTCACCAGGCTCAAAC 660
|||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 601 CATGGCGATGCTGGCCCTTCAAGCTTTCGTCCTACGAATCCCGCTTCCCCAGGCTCAAAC 660
Query 661 ACCAATTTCACATACTGGGACTCTCGGGCTTCCCCTGAAGATATGGAAGATATGTGGAAT 720
||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 661 ACCGATTTCACATACTGGGACTCTCGAGCTTCCCCCGAAGATATGGAAGATATGTGGAAT 720
Query 721 CATTCTGAAGTATGTAAAGAGTGGACAAAATCTAAAGAAGAAAGGGGAAAGGTTCGTTTT 780
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAGTCTGAAATATGTAAAGAGTGGACAAAATCTAAAGAAGAAAGGGGAAAGGTTCGTTTT 780
Query 781 TCACAAGATGGTGAAAAGAGGCCTTACCTTTCTCGAGGGGAACTTAAGGCTGTTGCAGAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCACAAGATGGTGAAAAGAGGCCTTACCTTTCTCGAGGGGAACTTAAGGCTGTTGCAGAA 840
Query 841 ATAATTGTTTCGAAGTACTTCAGCACGAAAGGAATTAGAGTTCCTCTTGTTTGTGCGATT 900
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATAATTGTTTCAAAGTACTTCAGCACGAAAGGAATTAGAGTTCCTCTTGTTTGTGCGATT 900
Query 901 GCTGATACTGTGTGCATGCGGTTTGTGAACGGTACTAAGAAACATGTAGGTATACTCGGA 960
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 901 GCTGATACTGTGTGCATGCGGTTTGTGAACGGTATTAAGAAACATGTAGGAATACTCGGA 960
Query 961 GTGGACTACTCAACCGCTTCCTGGTTATACTCGGAGCTAGGATACCGTGCATACAGAGTC 1020
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 961 GTGGACTACTCAACCGCTTCATGGTTATACTCGGAGCTAGGATACCGAGCATACAGAGTC 1020
Query 1021 GATTCAGCAGACGATTTGACCAAACCATTTGTCTCTATGTACTTCGGTGTAGCCTATTTG 1080
||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1021 GATTCAGCAGACGATCTAACCAAACCATTTATCTCTATGTACTTTGGTGTAGCCTATTTG 1080
Query 1081 GTTTGGTTATCGGAATATGAAGGAAGTCAGAGAAGTAATCAATTCATTGTCCAAGCTTAT 1140
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1081 GTTTGGTTATCGGAATATGAAGGAAGTCAAAGAAGTAATCAATTCATTGTCCAAGCATAT 1140
Query 1141 ATCAACGGTCCTGACCACGTCGATCTTGAGGCATCATGTCCACTCTGGCTCAAGTTCGAG 1200
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1141 ATGAAAGGTCCTGACCACGTCGATCTTGAGGAATCATGTCCACTCTGGCTCAAGTTCGAG 1200
Query 1201 CAAGCTCTGAGTTACTATGAAGTGTCGAAGAGGTATCATTGGATTCAGGAAGCTGCATTA 1260
|||||||||||||||||||||| ||| |||||| | |||||||||||||| |||
Sbjct 1201 CAAGCTCTGAGTTACTATGAAGAGTCCAAGAGG-------G-ATTCAGGAAGCTGCGTTA 1252
Query 1261 TCCTATGAGACAACGTTTATTAATACACATATGATGAAGATTAAAGAATTTAGCTTTGGT 1320
||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 1253 TCCTATGAGACAACGTTTATTAAGACACATATGATGAAGATTAACGGATTTAGCTTTGGT 1312
Query 1321 TTCGTGTGTGTTTGT-ATCACAAGATTTCCTTTCTGCGGTTTCTGTTTTTGTCTTTAA 1377
||||||||| || || |||||||||||||||||||| | |||||||||||| ||||||
Sbjct 1313 TTCGTGTGT-TT-GTTATCACAAGATTTCCTTTCTG-G-TTTCTGTTTTTGACTTTAA 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5