BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312610
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16330.1 | Symbols: CYCB3;1 | cyclin b3;1 | chr1:5582387-558... 1140 0.0
> AT1G16330.1 | Symbols: CYCB3;1 | cyclin b3;1 | chr1:5582387-5587391
REVERSE LENGTH=1947
Length=1947
Score = 1140 bits (617), Expect = 0.0
Identities = 751/812 (92%), Gaps = 23/812 (3%)
Strand=Plus/Plus
Query 291 AGCTAGTAAAGTCAGCAATAAAGCTGTCCCACAGCTGAGGAGTGCCGGAACCTATACTTT 350
||| ||||||| |||||| |||||||||| ||||| || |||||||||||||||||||
Sbjct 666 AGCCAGTAAAGCCAGCAACCAAGCTGTCCCGCAGCTAAGCAGTGCCGGAACCTATACTTG 725
Query 351 GAAAACTCGGACAAGTGTCAGCTCTATACCATCGGACCGCAA-CAGACAGAGTAAGAATA 409
||||||||| ||||||||| ||||||||| ||||||| |||| || |||||||||||||
Sbjct 726 GAAAACTCGAACAAGTGTCGGCTCTATACAATCGGACGGCAATAAG-CAGAGTAAGAATA 784
Query 410 ACGT-C----C-----G-----TATC---ATCCAGACAACTGTAAAGACGTCGCTACAAA 451
|||| | | | |||| |||||||||||||||||||| ||||||||||
Sbjct 785 ACGTCCGTTTCGTAAGGAAATCTATCAAGATCCAGACAACTGTAAAGACTTCGCTACAAA 844
Query 452 ACCGTAGTTCTCTTACGAAGCCCCCAGTGGGTAGAAGTAAATCAAGATCTATTTCTTCAA 511
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 ACCGTAGCTCTCTTAAGAAGCCCCCAGTGGGTAGAAGTAAATCAAGATCTATTTCTTCAA 904
Query 512 TCCCTTCTTCTGAAATAGTTGCCTTAACGCTGTCACTTCCGAAAAAGGTTGAAACAAAAT 571
|||||||||||| |||||||| ||| |||||||||||| |||||||||| |||||||
Sbjct 905 TCCCTTCTTCTG---CAGTTGCCTCAACACTGTCACTTCCGGAAAAGGTTGAGACAAAAT 961
Query 572 GTCTCGAAGAAGACACTCAAGGAGAGAGTTCATCTAGTAGAAACAAAGACCCAACAACAA 631
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 962 GTCTTGAAGAAGACACTCAAGGAGAGAGTTCATCTAGTGGAAACAAAGACCCAACAACAA 1021
Query 632 AAGTGTTGGATGTTACAGCGAAGCCAAAATCAAAGCGTAGAAAGTCTTTCACATCTCTAC 691
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1022 AAGTGTTGGATGTTACAGCGAAGCCAAAATCAAAACGTAGAAAGTCTTTCACATCTCTAC 1081
Query 692 TAGTAAATGGATCAAAGTTGGATGAGAAAAATGGTGAAACCACAGAGGCAGAGAAACTTC 751
|||| |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||
Sbjct 1082 TAGTGAATGGATCAAAGTTCGATGAGAAAAATGGTGAAACCACAGAGCCAGAAAAACTTC 1141
Query 752 CAAACATTGATGATGAATCCAATCAGTTGGAAGTTGCAGAATATGTGGATGACATATATC 811
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1142 CAAGCATTGATGATGAATCCAATCAGCTGGAAGTTGCAGAATATGTGGATGACATATATC 1201
Query 812 AGTTCTATTGGACTGCAGAGGCGTTAAATCCAGCTTTGGGATACTACTTGTCAGCTCATG 871
||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||||
Sbjct 1202 AGTTCTATTGGACTGCAGAAGCATTAAATCCAGCTTTGGGACATTACTTGTCAGCTCATG 1261
Query 872 CAGAAGTCAGTCCAGTTACGCGTGGAATTTTGATCAACTGGCTTATCGAAGTTCATTTCA 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CAGAAGTCAGTCCAGTTACGCGTGGAATTTTGATCAACTGGCTTATCGAAGTTCATTTCA 1321
Query 932 AATTTGATCTAATGCATGAGACTCTCTACCTGACAATGGACTTATTAGACCGTTACCTCT 991
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1322 AATTTGATCTAATGCATGAGACTCTTTACCTGACAATGGACTTATTAGACCGTTACCTCT 1381
Query 992 CTCAAGTTCCAATACATAAAAATGAGATGCAATTGATTGGTCTTACTGCACTCTTATTGG 1051
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1382 CCCAAGTTCCAATACATAAAAATGAGATGCAATTGATAGGTCTTACTGCACTCTTATTGG 1441
Query 1052 CATCTAAATATGAGGACTATTGGCATCCTAGG 1083
||||||||||||||||||| ||||||||||||
Sbjct 1442 CATCTAAATATGAGGACTACTGGCATCCTAGG 1473
Score = 678 bits (367), Expect = 0.0
Identities = 399/415 (96%), Gaps = 0/415 (0%)
Strand=Plus/Plus
Query 1083 GGAGAGGATTATGCTTAAACAGTTAAAGTTCCGTTTGAATGCACCCACCCCCTATGTTTT 1142
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 GGAGAGAAGTATGCTTAAACAGTTAAAGTTCCGTTTGAATGCACCCACCCCCTATGTTTT 1592
Query 1143 CATGTTGAGGTTCCTAAAAGCTGCTCAATCAAATAAGAAGCTTGAACAACTCGCCTTCTA 1202
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1593 CATGTTGAGGTTCCTAAAAGCTGCTCAATCCAATAAGAAGCTTGAACAACTCGCCTTCTA 1652
Query 1203 CCTTATCGAGTTGTGCTTGGTGGAGTACGAAGCTTTGAAGTATAAGCCATCATTGCTATG 1262
||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1653 CCTTATCGAGTTGTGTTTGGTTGAGTACGAAGCTTTGAAGTATAAGCCATCACTGCTATG 1712
Query 1263 TGCATCAGCCATATATGTTGCCCGATGCACTTTGCATATGACTCCAGTTTGGACCTCGCT 1322
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1713 TGCATCAGCCATTTATGTTGCCAGATGCACTTTGCATATGACTCCAGTTTGGACCTCGCT 1772
Query 1323 CCTAAACAACCATACCCACTACAATGTCTCCCAGATGAAGGATTGTTCTGACATGGTCTT 1382
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1773 CCTAAACAACCATACCCACTACAATGTCTCCCAGATGAAGGACTGTTCTGACATGATCTT 1832
Query 1383 AAGGTTTCACAAAGCTGCTAAAACAGGAAAACTGAGGGTCACTTATGAGAAGTACATGAA 1442
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1833 AAGGTTTCACAAAGCTGCTAAAACAGGAAACCTGAGGGTCACTTATGAGAAGTACATAAA 1892
Query 1443 TCCAGATCACAGTAATGTCGCAGTCTTGAAACCCTTGGATAAACTCCCTCTCTAA 1497
|||||||| |||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1893 TCCAGATCGCAGTAACGTCGCAGTCTTGAAGCCCTTAGATAAACTCCCTCTCTAA 1947
Score = 213 bits (115), Expect = 4e-54
Identities = 145/159 (91%), Gaps = 4/159 (3%)
Strand=Plus/Plus
Query 1 ATGGCGTTCGCAAAGGCACCACGACTAAGTAGAGATGATATTCTTGGAAATCGAGTGGGC 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGCGTTCGCGAAGGCACCACGACTAAGTAGAGATGATATTCTTGGAAATCGAGTGAGT 60
Query 61 ACTAGGAGTTTCAAAATCTTCTCTGATAATCAGAAAACTGATCCAGCGGGTACAGTAGTT 120
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |
Sbjct 61 ACTAGGAGTTTCAAAATCTTCTCCGATAATCAGAAAACTGATCCAGCCAGTACAATAGGT 120
Query 121 ACTTCGCAGAAGA---CTCGTATTCCTTTGAGAAGGAAA 156
||||| ||||||| |||||||||||||||| || |||
Sbjct 121 ACTTCACAGAAGAAGACTCGTATTCCTTTGAGGAG-AAA 158
Score = 80.5 bits (43), Expect = 4e-14
Identities = 47/49 (96%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 148 AGAAGGAAAATTCGAGAATCACAGGAAAGGGCGAAATCAGTATTGAAAA 196
|||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 212 AGAAGGAAAATTCGAGAATCACAGGAAAGGGCAAAAGCAGTATTGAAAA 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5