BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg312610 Length=1497 Score E Sequences producing significant alignments: (Bits) Value AT1G16330.1 | Symbols: CYCB3;1 | cyclin b3;1 | chr1:5582387-558... 1140 0.0 > AT1G16330.1 | Symbols: CYCB3;1 | cyclin b3;1 | chr1:5582387-5587391 REVERSE LENGTH=1947 Length=1947 Score = 1140 bits (617), Expect = 0.0 Identities = 751/812 (92%), Gaps = 23/812 (3%) Strand=Plus/Plus Query 291 AGCTAGTAAAGTCAGCAATAAAGCTGTCCCACAGCTGAGGAGTGCCGGAACCTATACTTT 350 ||| ||||||| |||||| |||||||||| ||||| || ||||||||||||||||||| Sbjct 666 AGCCAGTAAAGCCAGCAACCAAGCTGTCCCGCAGCTAAGCAGTGCCGGAACCTATACTTG 725 Query 351 GAAAACTCGGACAAGTGTCAGCTCTATACCATCGGACCGCAA-CAGACAGAGTAAGAATA 409 ||||||||| ||||||||| ||||||||| ||||||| |||| || ||||||||||||| Sbjct 726 GAAAACTCGAACAAGTGTCGGCTCTATACAATCGGACGGCAATAAG-CAGAGTAAGAATA 784 Query 410 ACGT-C----C-----G-----TATC---ATCCAGACAACTGTAAAGACGTCGCTACAAA 451 |||| | | | |||| |||||||||||||||||||| |||||||||| Sbjct 785 ACGTCCGTTTCGTAAGGAAATCTATCAAGATCCAGACAACTGTAAAGACTTCGCTACAAA 844 Query 452 ACCGTAGTTCTCTTACGAAGCCCCCAGTGGGTAGAAGTAAATCAAGATCTATTTCTTCAA 511 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 ACCGTAGCTCTCTTAAGAAGCCCCCAGTGGGTAGAAGTAAATCAAGATCTATTTCTTCAA 904 Query 512 TCCCTTCTTCTGAAATAGTTGCCTTAACGCTGTCACTTCCGAAAAAGGTTGAAACAAAAT 571 |||||||||||| |||||||| ||| |||||||||||| |||||||||| ||||||| Sbjct 905 TCCCTTCTTCTG---CAGTTGCCTCAACACTGTCACTTCCGGAAAAGGTTGAGACAAAAT 961 Query 572 GTCTCGAAGAAGACACTCAAGGAGAGAGTTCATCTAGTAGAAACAAAGACCCAACAACAA 631 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 962 GTCTTGAAGAAGACACTCAAGGAGAGAGTTCATCTAGTGGAAACAAAGACCCAACAACAA 1021 Query 632 AAGTGTTGGATGTTACAGCGAAGCCAAAATCAAAGCGTAGAAAGTCTTTCACATCTCTAC 691 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1022 AAGTGTTGGATGTTACAGCGAAGCCAAAATCAAAACGTAGAAAGTCTTTCACATCTCTAC 1081 Query 692 TAGTAAATGGATCAAAGTTGGATGAGAAAAATGGTGAAACCACAGAGGCAGAGAAACTTC 751 |||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| Sbjct 1082 TAGTGAATGGATCAAAGTTCGATGAGAAAAATGGTGAAACCACAGAGCCAGAAAAACTTC 1141 Query 752 CAAACATTGATGATGAATCCAATCAGTTGGAAGTTGCAGAATATGTGGATGACATATATC 811 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1142 CAAGCATTGATGATGAATCCAATCAGCTGGAAGTTGCAGAATATGTGGATGACATATATC 1201 Query 812 AGTTCTATTGGACTGCAGAGGCGTTAAATCCAGCTTTGGGATACTACTTGTCAGCTCATG 871 ||||||||||||||||||| || |||||||||||||||||| | |||||||||||||||| Sbjct 1202 AGTTCTATTGGACTGCAGAAGCATTAAATCCAGCTTTGGGACATTACTTGTCAGCTCATG 1261 Query 872 CAGAAGTCAGTCCAGTTACGCGTGGAATTTTGATCAACTGGCTTATCGAAGTTCATTTCA 931 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 CAGAAGTCAGTCCAGTTACGCGTGGAATTTTGATCAACTGGCTTATCGAAGTTCATTTCA 1321 Query 932 AATTTGATCTAATGCATGAGACTCTCTACCTGACAATGGACTTATTAGACCGTTACCTCT 991 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1322 AATTTGATCTAATGCATGAGACTCTTTACCTGACAATGGACTTATTAGACCGTTACCTCT 1381 Query 992 CTCAAGTTCCAATACATAAAAATGAGATGCAATTGATTGGTCTTACTGCACTCTTATTGG 1051 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1382 CCCAAGTTCCAATACATAAAAATGAGATGCAATTGATAGGTCTTACTGCACTCTTATTGG 1441 Query 1052 CATCTAAATATGAGGACTATTGGCATCCTAGG 1083 ||||||||||||||||||| |||||||||||| Sbjct 1442 CATCTAAATATGAGGACTACTGGCATCCTAGG 1473 Score = 678 bits (367), Expect = 0.0 Identities = 399/415 (96%), Gaps = 0/415 (0%) Strand=Plus/Plus Query 1083 GGAGAGGATTATGCTTAAACAGTTAAAGTTCCGTTTGAATGCACCCACCCCCTATGTTTT 1142 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1533 GGAGAGAAGTATGCTTAAACAGTTAAAGTTCCGTTTGAATGCACCCACCCCCTATGTTTT 1592 Query 1143 CATGTTGAGGTTCCTAAAAGCTGCTCAATCAAATAAGAAGCTTGAACAACTCGCCTTCTA 1202 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1593 CATGTTGAGGTTCCTAAAAGCTGCTCAATCCAATAAGAAGCTTGAACAACTCGCCTTCTA 1652 Query 1203 CCTTATCGAGTTGTGCTTGGTGGAGTACGAAGCTTTGAAGTATAAGCCATCATTGCTATG 1262 ||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 1653 CCTTATCGAGTTGTGTTTGGTTGAGTACGAAGCTTTGAAGTATAAGCCATCACTGCTATG 1712 Query 1263 TGCATCAGCCATATATGTTGCCCGATGCACTTTGCATATGACTCCAGTTTGGACCTCGCT 1322 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1713 TGCATCAGCCATTTATGTTGCCAGATGCACTTTGCATATGACTCCAGTTTGGACCTCGCT 1772 Query 1323 CCTAAACAACCATACCCACTACAATGTCTCCCAGATGAAGGATTGTTCTGACATGGTCTT 1382 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1773 CCTAAACAACCATACCCACTACAATGTCTCCCAGATGAAGGACTGTTCTGACATGATCTT 1832 Query 1383 AAGGTTTCACAAAGCTGCTAAAACAGGAAAACTGAGGGTCACTTATGAGAAGTACATGAA 1442 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1833 AAGGTTTCACAAAGCTGCTAAAACAGGAAACCTGAGGGTCACTTATGAGAAGTACATAAA 1892 Query 1443 TCCAGATCACAGTAATGTCGCAGTCTTGAAACCCTTGGATAAACTCCCTCTCTAA 1497 |||||||| |||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct 1893 TCCAGATCGCAGTAACGTCGCAGTCTTGAAGCCCTTAGATAAACTCCCTCTCTAA 1947 Score = 213 bits (115), Expect = 4e-54 Identities = 145/159 (91%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 1 ATGGCGTTCGCAAAGGCACCACGACTAAGTAGAGATGATATTCTTGGAAATCGAGTGGGC 60 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 ATGGCGTTCGCGAAGGCACCACGACTAAGTAGAGATGATATTCTTGGAAATCGAGTGAGT 60 Query 61 ACTAGGAGTTTCAAAATCTTCTCTGATAATCAGAAAACTGATCCAGCGGGTACAGTAGTT 120 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| | Sbjct 61 ACTAGGAGTTTCAAAATCTTCTCCGATAATCAGAAAACTGATCCAGCCAGTACAATAGGT 120 Query 121 ACTTCGCAGAAGA---CTCGTATTCCTTTGAGAAGGAAA 156 ||||| ||||||| |||||||||||||||| || ||| Sbjct 121 ACTTCACAGAAGAAGACTCGTATTCCTTTGAGGAG-AAA 158 Score = 80.5 bits (43), Expect = 4e-14 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 148 AGAAGGAAAATTCGAGAATCACAGGAAAGGGCGAAATCAGTATTGAAAA 196 |||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 212 AGAAGGAAAATTCGAGAATCACAGGAAAGGGCAAAAGCAGTATTGAAAA 260 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73845001695 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5