BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312611
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16340.4 | Symbols: ATKDSA2 | Aldolase superfamily protein |... 1336 0.0
> AT1G16340.4 | Symbols: ATKDSA2 | Aldolase superfamily protein
| chr1:5587790-5590642 REVERSE LENGTH=1297
Length=1297
Score = 1336 bits (723), Expect = 0.0
Identities = 832/882 (94%), Gaps = 18/882 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAATTCAGCGTCACTACTGTACGATCAGCTCAAGGTTGCGGAGCCGTTTTTCTTG 60
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 174 ATGGCGAATTCAGCGTCACTACTGTATGATCAGCTCAAGGTTGCTGAGCCGTTTTTCTTA 233
Query 61 TTTGCTGGTCCAAATGTGATTGAATCCGAAGAACATGTTCTTCGAATGGCGAAAAGCATC 120
|| ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||
Sbjct 234 TTGGCTGGTCCAAATGTGATCGAATCCGAAGAGCATGTTCTTCGTATGGCTAAAAGCATC 293
Query 121 AAAGAGATTTCTAC--A--A--CGCTTGGATTGCCCCTGGTTTTCAAGTCAAGTTTCGAT 174
||||| ||||| || | | |||||| ||||| ||||||||||||||||||||||||
Sbjct 294 AAAGATATTTCGACAAAGTATGTGCTTGGGTTGCCTCTGGTTTTCAAGTCAAGTTTCGAT 353
Query 175 AAAGCTAACAGAACTTCATCAAAGTCCTTCCGAGGTCCTGGCATGGCTGAAGGTCTCAAG 234
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 354 AAAGCTAACAGAACTTCATCAAAGTCCTTCCGAGGTCCTGGCATGGCTGAGGGGCTCAAG 413
Query 235 ATTCTTGAGAAGGTGAAAGTAGCATATGATCTACCAATCGTAACTGACGTTCATGAATCG 294
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 414 ATTCTTGAGAAGGTGAAAGTAGCATTTGATCTACCAATCGTTACTGACGTTCATGAGTCG 473
Query 295 AGCCAGTGTGAAGCGGTCGGCAAGGTTGCAGATGTAATTCAGATACCAGCGTTCTTA--T 352
|| ||||||||||| || ||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 474 AGTCAGTGTGAAGCAGTTGGCAAGGTTGCAGATATAATTCAGATACCGGCGTTCTTATGT 533
Query 353 ----------ATCTTCTGGTCGCGGCAGCCCAAACTGGGAAAATTATCAACATAAAGAAA 402
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 534 CGACAGACAGATCTTCTGGTCGCGGCAGCCCAAAGTGGGAAAATTATCAACATAAAGAAA 593
Query 403 GGACAATTTTGTGGTCACTCTGTCATGAGAAACTCGGCCGAGAAGGTTAGACTCGCAGGG 462
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 594 GGACAATTTTGTGGTCACTCTGTCATGAGAAACTCGGCTGAGAAGGTTAGACTCGCAGGG 653
Query 463 AATCCAAATGTGATGGTTTGTGAAAGAGGAACCATGTTTGGATACAATGATTTAATAGTA 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AATCCAAATGTGATGGTTTGTGAAAGAGGAACCATGTTTGGATACAATGATTTAATAGTA 713
Query 523 GATCCACGAAATTTGGAATGGATGAGGGAAGCTGATTGTCCCGTTGTTGCTGATATAACT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GATCCACGAAATTTGGAATGGATGAGGGAAGCTGATTGTCCCGTTGTTGCTGATATAACT 773
Query 583 CATTCATTACAACAACCTGCAGGCAAGAAGTTAGATGGTGGGGGTGTTGCTAGTGGAGGC 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 774 CATTCATTACAACAACCTGCAGGCAAGAAGTTAGATGGTGGGGGTGTTGCTAGTGGTGGC 833
Query 643 CTTCGCGAATTAATACCATGCGTAGCAAGAACAGCCGTAGCTGTTGGTGTCAATGGAATT 702
||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 834 CTTCGCGAATTAATACCATGCATAGCAAGAACCGCCGTAGCTGTTGGTGTCGATGGAATT 893
Query 703 TTCATGGAGGTGCATGATGATCCTTTGAATGCACCAGTCGATGGTCCAACACAATGGCCT 762
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 894 TTCATGGAGGTGCATGATGATCCTTTAAATGCACCGGTCGATGGTCCAACACAATGGCCT 953
Query 763 CTGCGTCATCTAGAAGAACTGCTAGAAGAGCTCATTGCAATCGCGAGTGTCACAAAGGGG 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CTGCGTCATCTAGAAGAACTGCTAGAAGAGCTCATTGCAATCGCGAGTGTCACAAAGGGG 1013
Query 823 AAACAGCAGTTCCAAATCGATCTCACGCCTTATCGTGATTAG 864
||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1014 AAACAACAGTTCCAAATCGATCTCACGCCTTATCGTGATTAG 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5