BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312620
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16430.1 | Symbols: | Surfeit locus protein 5 subunit 22 of... 682 0.0
AT1G07950.1 | Symbols: MED22B | Surfeit locus protein 5 subunit... 575 1e-163
> AT1G16430.1 | Symbols: | Surfeit locus protein 5 subunit 22
of Mediator complex | chr1:5614619-5615510 FORWARD LENGTH=579
Length=579
Score = 682 bits (369), Expect = 0.0
Identities = 424/450 (94%), Gaps = 6/450 (1%)
Strand=Plus/Plus
Query 1 ATGAACAAAGGCGGTGGTTCCGGTGGAGGAAGCGGACCGAC-G--GCCGCGGCAGCCGCT 57
|||||||||||||||||||||||||||||||||||||| || | || ||||||||||||
Sbjct 17 ATGAACAAAGGCGGTGGTTCCGGTGGAGGAAGCGGACCAACAGCTGCTGCGGCAGCCGCT 76
Query 58 GCTGCCTTACAGAAACAAAAGGCCTTGATGCAGAGGGTAGAGACTGACATCACATCTGTC 117
|| | |||||||| |||||||| ||| ||||||| || || ||||||||||||||||||
Sbjct 77 GC-G--TTACAGAAGCAAAAGGCGTTGTTGCAGAGAGTTGATACTGACATCACATCTGTC 133
Query 118 GTCGATAACTTCACTCAAATCGTCAATGTCGCAAGGGTGAGTGATCCACCAATGAAGAAC 177
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 134 GTCGATAACTTCAATCAAATCGTCAATGTCGCAAGGGTGAGTGATCCGCCAATGAAGAAC 193
Query 178 TCTCAGGAAGCATACATGATGGAGATGCGAGCGTCAAGATTGGTTCAAGCAGCTGATTCT 237
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 194 TCTCAGGAAGCATACATGATGGAGATGCGAGCATCAAGATTGGTTCAAGCAGCTGATTCT 253
Query 238 CTTTTGAAACTCGTTTCGGAACTGAAGCAAACCGCGATTTTTTCAGGATTTGCATCACTA 297
||||||||||| || || || |||||||||||||||||||||||||||||||||||| ||
Sbjct 254 CTTTTGAAACTTGTATCAGAGCTGAAGCAAACCGCGATTTTTTCAGGATTTGCATCATTA 313
Query 298 AATGATCATGTAGAACAAAGAATTGCAGAGTTTGATCAAGAGGCCGAGAAGACGAATCGA 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 AACGATCATGTAGAACAAAGAATTGCAGAGTTTGATCAAGAGGCCGAGAAGACGAATCGA 373
Query 358 TTGTTGGCTAGAATTGCTGATGATGCATCTGCTAGCCTTAAAGAACTTGAGTCTCACTAT 417
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 374 TTGTTGGCTAGAATTGCTGATGATGCATCTGCTAGTCTTAAAGAGCTTGAGTCTCACTAT 433
Query 418 TACTCTTCTGCTCAGAGATTGACTCTAGAC 447
||||||||||||||||||| ||||||||||
Sbjct 434 TACTCTTCTGCTCAGAGATCGACTCTAGAC 463
> AT1G07950.1 | Symbols: MED22B | Surfeit locus protein 5 subunit
22 of Mediator complex | chr1:2465770-2467022 REVERSE LENGTH=796
Length=796
Score = 575 bits (311), Expect = 1e-163
Identities = 392/432 (91%), Gaps = 2/432 (0%)
Strand=Plus/Plus
Query 19 TCCGGTGGAGGAAGCGGACCGACGGCCGCGGCAGCCGCTGCTGCCTTACAGAAACAAAAG 78
||||||||||||||||| || |||||||| || ||||| || || |||||||| ||||||
Sbjct 71 TCCGGTGGAGGAAGCGGTCCAACGGCCGCCGCCGCCGCCGCGGCTTTACAGAAGCAAAAG 130
Query 79 GCCTTGATGCAGAGGGTAGAGACTGACATCACATCTGTCGTCGATAACTTCACTCAAATC 138
|| ||| | ||||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct 131 GCGTTGTTACAGAGAGTGGAGACTGACATCACATCTGTCGTCGATAACTTCACGCAGATC 190
Query 139 GTCAATGTCGCAAGGGTGAGTGATCCACCAATGAAGAACTCTCAGGAAG-CATACATGAT 197
|||||||| |||||||||||||||| || |||||||||| |||| || ||||||||||
Sbjct 191 GTCAATGTTTCAAGGGTGAGTGATCCGCCGGTGAAGAACTCGCAGG-AGACATACATGAT 249
Query 198 GGAGATGCGAGCGTCAAGATTGGTTCAAGCAGCTGATTCTCTTTTGAAACTCGTTTCGGA 257
|||||||||||| || ||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 250 GGAGATGCGAGCTTCTAGAATGGTTCAAGCAGCTGATTCTCTTTTGAAACTCGTATCAGA 309
Query 258 ACTGAAGCAAACCGCGATTTTTTCAGGATTTGCATCACTAAATGATCATGTAGAACAAAG 317
||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 310 ACTTAAGCAAACAGCGATATTTTCAGGATTTGCATCACTAAACGATCATGTAGAACAAAG 369
Query 318 AATTGCAGAGTTTGATCAAGAGGCCGAGAAGACGAATCGATTGTTGGCTAGAATTGCTGA 377
||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 370 AATAGAAGAGTTTGATCAAGAGGCCGAGAAGACAAATCGATTGTTGGCTAGAATTGCTGA 429
Query 378 TGATGCATCTGCTAGCCTTAAAGAACTTGAGTCTCACTATTACTCTTCTGCTCAGAGATT 437
|||||||||||| | |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 430 TGATGCATCTGCCAATCTTAAAGAGCTCGAGTCTCACTATTACTCTTCTGCTCAGAGATT 489
Query 438 GACTCTAGACAT 449
||||||||||||
Sbjct 490 GACTCTAGACAT 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21564864321
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5