BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312638

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16640.1 | Symbols:  | AP2/B3-like transcriptional factor fa...   514    3e-145


> AT1G16640.1 | Symbols:  | AP2/B3-like transcriptional factor 
family protein | chr1:5686603-5687715 FORWARD LENGTH=747
Length=747

 Score =  514 bits (278),  Expect = 3e-145
 Identities = 344/376 (91%), Gaps = 4/376 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTGACACTGGTGAGGTTCGATTTTTTAAGCCTTTCATCTCACAAAAGTCATCTAAA  60
            |||||||||||||||||||||| |||| | ||||||||||||||| ||||||||||||||
Sbjct  161  ATGGCTGACACTGGTGAGGTTCAATTTATGAAGCCTTTCATCTCAGAAAAGTCATCTAAA  220

Query  61   TCATTGGCAATTCCCTTGGGATTCGAGGAACACTTCCCTGCTCCATTGCCAATAACGGTG  120
            ||||||| ||| |||||||||||| | ||| ||||||| || ||||| |||||||| |||
Sbjct  221  TCATTGGAAATCCCCTTGGGATTCAACGAATACTTCCCAGCACCATTTCCAATAACTGTG  280

Query  121  GACCTCCTAGACTACAATGGGAGATCTTGGACGGTTA-GAGTGAAGAAAAGAGGAGAGAA  179
            |||||||| ||||| | |||||||||||||||||||| || |||||||||||||||||||
Sbjct  281  GACCTCCTGGACTATAGTGGGAGATCTTGGACGGTTAGGA-TGAAGAAAAGAGGAGAGAA  339

Query  180  TGTGTTTCTTACAGTTGGATGGGAGAATTTTGTAAAAGATAACAATCTCGAAGATGGCAA  239
             ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  340  AGTGTTTCTTACAGTTGGTTGGGAGAATTTTGTAAAAGATAACAATCTCGAAGATGGCAA  399

Query  240  GCATTTGAACTTCATCTATGACCGCAATAGGACCTTTTATGTTATCATATTTGGTCATAA  299
            | ||||| | ||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct  400  GTATTTGCAGTTCATCTATGACCGCGACAGGACCTTTTATGTTATCATATATGGTCATAA  459

Query  300  CATGTGTAGCGAATTTAGA-AGCTTCCCTCAAGTCGTAGTAGAGGTTGACGACTATGAAA  358
            |||||||||||||| |||| | |||||||||||||| |||||||||||| ||||||||||
Sbjct  460  CATGTGTAGCGAATATAGAGA-CTTCCCTCAAGTCGCAGTAGAGGTTGATGACTATGAAA  518

Query  359  ACGGTGAAGAAGTAGA  374
            |||||||||||| |||
Sbjct  519  ACGGTGAAGAAGAAGA  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5