BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312643

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16705.2 | Symbols:  | p300/CBP acetyltransferase-related pr...   289    3e-77


> AT1G16705.2 | Symbols:  | p300/CBP acetyltransferase-related 
protein-related | chr1:5712088-5713752 FORWARD LENGTH=790
Length=790

 Score =  289 bits (156),  Expect = 3e-77
 Identities = 203/225 (90%), Gaps = 5/225 (2%)
 Strand=Plus/Plus

Query  1    ATGGACAATGATGTTTTCCAAATTCGCCGGTCCATGCGAGATGCTATCTTCGTCCTGTTA  60
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct  171  ATGGACAATGATGTTTTCCAGATTCGCCGGTCCATGCGAGACGCTATCTTCGTCCAGTTA  230

Query  61   GAGAAGCGAAATCCACTTCCGACTGATGATGCATCAAAGGCCAAATGTTTAGATGCTGTT  120
            ||||||||||| |||||||||| |||||||||||||||||  ||   |||||||||   |
Sbjct  231  GAGAAGCGAAACCCACTTCCGAATGATGATGCATCAAAGGGGAAGCATTTAGATGC---T  287

Query  121  GCTAAACGCTTAGAGG-AGCTAATTTTTAAAATGGCTATGACAAAGGAGGAATACTTGAA  179
            |||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||
Sbjct  288  GCTAAACGCTTAGAGGAAG-GACTTTTTAAAATGGCTATGACAAAGGAGGAATACTTGAA  346

Query  180  CCCGTCAACCCTCGAATCTCGCTTGAAAAGCTTAATATTAGGCAG  224
            ||||||||| || ||||||||||||| ||||||||||  ||||||
Sbjct  347  CCCGTCAACTCTTGAATCTCGCTTGACAAGCTTAATAAAAGGCAG  391


 Score =  135 bits (73),  Expect = 4e-31
 Identities = 104/118 (88%), Gaps = 6/118 (5%)
 Strand=Plus/Plus

Query  252  TCTTTCTCCGACTTGTTTGGAAACGTTTTCATTGCTTATGTTACAAGGAAAAGATGATAA  311
            ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  576  TCTTTTTACGACTTGTTTGGAAACGTTTTCATTGCTTATGTTACAAGGAAAAGATGATAA  635

Query  312  CATATTCAATAC-A-CTACTACAGGCAGCTTCTGCATTGCTACTGTATTGCTACTTGT  367
            ||||| |||||| | |  || | | |  ||||| ||||||||||||||||||| ||||
Sbjct  636  CATATACAATACTAACG-CTTCTG-C--CTTCTCCATTGCTACTGTATTGCTAATTGT  689



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29186039407


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5