BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312655
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16820.1 | Symbols: | vacuolar ATP synthase catalytic subun... 289 1e-77
AT3G57770.1 | Symbols: | Protein kinase superfamily protein | ... 158 3e-38
AT3G57765.1 | Symbols: U2.3 | U2.3; snRNA | chr3:21397262-21398... 158 3e-38
AT5G09585.1 | Symbols: U2.5 | U2.5; snRNA | chr5:2974555-297530... 154 4e-37
AT3G56825.1 | Symbols: U2.4 | U2.4; snRNA | chr3:21041727-21042... 152 1e-36
AT3G57645.1 | Symbols: U2.2 | U2.2; snRNA | chr3:21346342-21347... 150 5e-36
AT5G61455.1 | Symbols: U2.7 | U2.7; snRNA | chr5:24713264-24714... 148 2e-35
AT3G56705.1 | Symbols: U2.6 | U2.6; snRNA | chr3:21004259-21004... 147 6e-35
> AT1G16820.1 | Symbols: | vacuolar ATP synthase catalytic subunit-related
/ V-ATPase-related / vacuolar proton pump-related
| chr1:5756835-5758464 REVERSE LENGTH=646
Length=646
Score = 289 bits (156), Expect = 1e-77
Identities = 239/274 (87%), Gaps = 26/274 (9%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 61 AAGGCCGAGAAAGGTATGATTTG-GA-AGTTGGATATC-AACTATGATAAATTCTGCCCT 117
||||||||||||||||||| ||| || | | ||||| | |||||||| ||||||| ||||
Sbjct 61 AAGGCCGAGAAAGGTATGAGTTGCGATA-T-GGATA-CGAACTATGACAAATTCTCCCCT 117
Query 118 TTCTACAAATCCGTGTGGATG--G--T----T-ATTCATTTCTACAACTTGGCCAATCAG 168
| ||||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct 118 TCCTACAAATCCGTGTGGATGATGCGTAACATTATTCATTTCTACAACTTGGCCAATCAG 177
Query 169 AG--AGT-AGCTG-G-AG-TGGA-TGGATGG-TCAGAAGATTACTTACACTCTCATCAAA 220
| | | | | | | || |||| ||||||| ||||| | ||||||||||||||||||||
Sbjct 178 -GCTATTGA-CAGAGCAGCTGGAGTGGATGGCTCAGACGGTTACTTACACTCTCATCAAA 235
Query 221 CATCGCTTGG-AGATCTTTTCTACCTCTTAGTGT 253
|||||||||| |||||||||||||| ||||||||
Sbjct 236 CATCGCTTGGGAGATCTTTTCTACCGCTTAGTGT 269
> AT3G57770.1 | Symbols: | Protein kinase superfamily protein
| chr3:21397542-21398853 FORWARD LENGTH=1242
Length=1242
Score = 158 bits (85), Expect = 3e-38
Identities = 85/85 (100%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 61 AAGGCCGAGAAAGGTATGATTTGGA 85
|||||||||||||||||||||||||
Sbjct 61 AAGGCCGAGAAAGGTATGATTTGGA 85
> AT3G57765.1 | Symbols: U2.3 | U2.3; snRNA | chr3:21397262-21398132
REVERSE LENGTH=871
Length=871
Score = 158 bits (85), Expect = 3e-38
Identities = 85/85 (100%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 532
Query 61 AAGGCCGAGAAAGGTATGATTTGGA 85
|||||||||||||||||||||||||
Sbjct 531 AAGGCCGAGAAAGGTATGATTTGGA 507
> AT5G09585.1 | Symbols: U2.5 | U2.5; snRNA | chr5:2974555-2975306
FORWARD LENGTH=752
Length=752
Score = 154 bits (83), Expect = 4e-37
Identities = 83/83 (100%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 475
Query 61 AAGGCCGAGAAAGGTATGATTTG 83
|||||||||||||||||||||||
Sbjct 474 AAGGCCGAGAAAGGTATGATTTG 452
> AT3G56825.1 | Symbols: U2.4 | U2.4; snRNA | chr3:21041727-21042609
REVERSE LENGTH=883
Length=883
Score = 152 bits (82), Expect = 1e-36
Identities = 84/85 (99%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 612
Query 61 AAGGCCGAGAAAGGTATGATTTGGA 85
||||||||||||||||||| |||||
Sbjct 611 AAGGCCGAGAAAGGTATGAATTGGA 587
> AT3G57645.1 | Symbols: U2.2 | U2.2; snRNA | chr3:21346342-21347204
FORWARD LENGTH=863
Length=863
Score = 150 bits (81), Expect = 5e-36
Identities = 81/81 (100%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 417
Query 61 AAGGCCGAGAAAGGTATGATT 81
|||||||||||||||||||||
Sbjct 416 AAGGCCGAGAAAGGTATGATT 396
> AT5G61455.1 | Symbols: U2.7 | U2.7; snRNA | chr5:24713264-24714094
REVERSE LENGTH=831
Length=831
Score = 148 bits (80), Expect = 2e-35
Identities = 82/83 (99%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 509
Query 61 AAGGCCGAGAAAGGTATGATTTG 83
||||||||||||||||||| |||
Sbjct 508 AAGGCCGAGAAAGGTATGAATTG 486
> AT3G56705.1 | Symbols: U2.6 | U2.6; snRNA | chr3:21004259-21004809
FORWARD LENGTH=551
Length=551
Score = 147 bits (79), Expect = 6e-35
Identities = 79/79 (100%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 252
Query 61 AAGGCCGAGAAAGGTATGA 79
|||||||||||||||||||
Sbjct 251 AAGGCCGAGAAAGGTATGA 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11611850019
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5