BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312664

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16916.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   233    4e-61


> AT1G16916.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:5786560-5787112 
REVERSE LENGTH=465
Length=465

 Score =  233 bits (126),  Expect = 4e-61
 Identities = 184/210 (88%), Gaps = 12/210 (6%)
 Strand=Plus/Plus

Query  1    ATGATCGAAGAAGGTCCACCAGCTCCGAAGATGCTTCGGATGGTCTACTTCGTCGGCGCC  60
            ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  66   ATGATGGAGGAAGGACCACCAGCTCCAAAGATGCTTCGAATGGTCTACTTCGTCGGCGCC  125

Query  61   GGATTTCTATGTACTTTCGCGATCAATAAATGGCGTGAGATGGAGAGAAACTCGATTCTG  120
            |||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||
Sbjct  126  GGATTTCTATGTACATTCGCGATCAATAAGTGGCGTGAGATGGAGAGAAACTCGCTTCTG  185

Query  121  AAACAGGAGCAGGAGAAGAATCAACAACATGGAGATGCAGCTTTATTGCATCAAACGCCT  180
            |||||||||||||||||||||||||||   |||||||  | |||||||| | | | |   
Sbjct  186  AAACAGGAGCAGGAGAAGAATCAACAA---GGAGATGTTGGTTTATTGCCT-AGA-G---  237

Query  181  CCAAATTCGATTCAGAAAGCTATGAAATGA  210
              |  |||| ||||||||||||||||||||
Sbjct  238  --A--TTCGGTTCAGAAAGCTATGAAATGA  263



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9406352637


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5