BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312683
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17160.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1592 0.0
> AT1G17160.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr1:5867635-5869356 FORWARD LENGTH=1324
Length=1324
Score = 1592 bits (862), Expect = 0.0
Identities = 1066/1159 (92%), Gaps = 36/1159 (3%)
Strand=Plus/Plus
Query 3 GATGAAGAAAGGGA--T-TTCAGTTTCTCAATCGATCAATTTTAATCCAAACATCGAATT 59
||||| |||||||| | ||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 43 GATGATGAAAGGGATCTCTTCAGTTTCTCAATCGATCAATTATAATCCATACATCGAATT 102
Query 60 CAATCGACCGCAACTTCAGATCAACACTGTGAATCCAAATCTAACCCAATCTCGATTTTC 119
|||||||||||| |||||||||| ||||||||||| |||| | | ||||||||||||||
Sbjct 103 CAATCGACCGCAGCTTCAGATCAGTACTGTGAATCCCAATCCAGCTCAATCTCGATTTTC 162
Query 120 CCGCCCTCTTTCCCGAAGATCCCTCCGTGTTCTCTCCCTATCCGTCGACGTCGATCCATC 179
||| || | | | ||||||||||||||||||| | | | || || |||||||||
Sbjct 163 CCG-CC-C--T--C---GATCCCTCCGTGTTCTCTCAC--T-C-TC--CGCCGATCCATC 207
Query 180 GGCAAATCGGAATGCTAAATCAG-C--T-----A-ACGCGCCGCCTCTGGTGGTTGTGGG 230
||||||||||||| ||||||||| | | | |||||||||| ||||||||||||||
Sbjct 208 GGCAAATCGGAATCCTAAATCAGCCGTTGACGCACACGCGCCGCCACTGGTGGTTGTGGG 267
Query 231 ATCTGCGAACGCCGATATCTATGTGGAGATCGAGAGATTACCCAAGG-AGGGCGAAACGA 289
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 268 ATCTGCGAACGCCGATATCTATGTGGAGATCGAGAGATTACCCAAGGAAGGG-GAAACGA 326
Query 290 TTTCAGCCAAGACAGGGCAAACCCTCGCCGGCGGAAAAGGCGCGAATCAGGCTGCGTGTG 349
|||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 327 TTTCGGCCAAGACAGGGCAAACGCTCGCCGGAGGAAAAGGCGCGAATCAGGCGGCGTGTG 386
Query 350 GAGCGAAGCTGCTTTATCCGACTTACTTCGTTGGTCGTTTGGGGGAGGACGCGCACGGGA 409
|||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 387 GAGCGAAGCTAATGTATCCGACTTACTTCGTTGGTCGTTTGGGAGAGGACGCGCACGGGA 446
Query 410 AGCTTATAGCTGAGGCGTTGGGC---GATGGGTGTGGTGTTCGCTTGGATTACGTTAGAT 466
|||| |||||||||||||||||| ||||||||||| |||| |||||| ||||| ||||
Sbjct 447 AGCTAATAGCTGAGGCGTTGGGCGATGATGGGTGTGGGGTTCACTTGGACTACGTGAGAT 506
Query 467 CGGTGAATGATGAGCCGACGGGACACGCGGTGGTGATGCTTCAATCGGACGGTCAGAATT 526
| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 507 CTGTGAATAATGAGCCGACGGGACACGCGGTGGTGATGCTTCAGTCGGACGGTCAGAATT 566
Query 527 CGATCATTATCGTTGGTGGTGCAAATATGAAAGCTTGGCCTGAGAAGATGA-CTGATGAT 585
||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct 567 CGATCATTATCGTTGGTGGTGCAAATATGAAAGCTTGGCCTGAGATTATGAGC-GATGAT 625
Query 586 GATCTTGAGATCGTGAGGAATGCTGGTATTGTGCTGCTTCAAAGAGAGATCCCAGATTCC 645
||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 626 GATCTTGAGATTGTGAGGAATGCTGGTATTGTGCTTCTGCAAAGGGAGATCCCAGATTCC 685
Query 646 ATCAATATTCAAGTTGCTAAGGCTGTGAAGAAAGCAGGTGTTCCGGTCATCCTTGATGTT 705
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 686 ATCAATATTCAAGTTGCTAAGGCTGTGAAGAAAGCAGGTGTTCCAGTCATCCTTGATGTG 745
Query 706 GGAGGAATGGATACGCCAATACCGAATGAGCTATTGGATTCCGTTGATATCTTGAGTCCG 765
||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||| ||
Sbjct 746 GGAGGAATGGATACGCCTATACCAAATGAGCTATTGGATTCCATTGATATCTTGAGCCCC 805
Query 766 AATGAAACTGAGCTCAGTCGCTTGACCGGAATGCCAACTGAAACTTTTGAACACATTAGC 825
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 806 AATGAAACTGAGCTCAGTCGCTTGACAGGAATGCCAACTGAAACTTTTGAACAGATTAGC 865
Query 826 CAAGCTGTTGCAAAGTGCCATAAGTTGGGAGTTAAGCAAGTCCTAGTGAAACTCGGGTCC 885
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 866 CAAGCTGTTGCAAAGTGCCATAAGTTGGGAGTTAAGCAAGTTCTAGTAAAACTCGGGTCC 925
Query 886 AAAGGATCTGCACTATTCATAGAAGGGGAAAAACCAATCCAGCAGTCTATAATAGCGGCT 945
||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 926 AAAGGATCTGCACTATTCATACAAGGGGAAAAACCAATCCAGCAGTCTATCATACCGGCT 985
Query 946 GCACAAGTGGTTGATACTACAGGAGCCGGGGATACTTTCACAGCAGCATTTGCAGTGGCT 1005
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 986 GCACAAGTGGTTGATACTACAGGAGCTGGGGATACTTTCACTGCAGCATTTGCAGTCGCT 1045
Query 1006 ATGGTAGAGGGCAAG-CCACATGAGGAATGCTTGAGATTTGCTGCTGCAGCTGCCTCTCT 1064
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 ATGGTAGAGGGCAAGTCC-CATGAGGAATGCTTGAGATTTGCTGCTGCAGCTGCCTCTCT 1104
Query 1065 TTGTGTCCAAGTAAAGGGTGCAATACCGAGCATGCCCGACCGAACATCTGTCTTGAAGCT 1124
|||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct 1105 TTGTGTCCAAGTAAAGGGTGCAATACCGAGCATGCCTGACCGAAAATCTGTTTTGAAGCT 1164
Query 1125 CCTTAAATCTAGTATCTAA 1143
|||||||| ||||||||||
Sbjct 1165 CCTTAAATTTAGTATCTAA 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5