BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312706
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17380.1 | Symbols: JAZ5, TIFY11A | jasmonate-zim-domain pro... 1096 0.0
> AT1G17380.1 | Symbols: JAZ5, TIFY11A | jasmonate-zim-domain protein
5 | chr1:5955488-5957212 REVERSE LENGTH=1133
Length=1133
Score = 1096 bits (593), Expect = 0.0
Identities = 759/836 (91%), Gaps = 23/836 (3%)
Strand=Plus/Plus
Query 3 GTCGAAAAATGAAAATGCTAAGGCACAAGCGCCGGAGAAATCCGACTTTACCAGGAGATG 62
||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 148 GTCGAGCAATGAAAATGCTAAGGCACAAGCGCCGGAGAAATCTGACTTTACCCGGAGATG 207
Query 63 TAGTTTGCTCAGCCGTTACTTGAAGGAGAAGGGTAGTTTCGGAAACATAGATCTTGGCTT 122
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 208 TAGTTTGCTCAGCCGTTACTTGAAGGAGAAGGGTAGTTTCGGAAACATTGATCTTGGCTT 267
Query 123 GCT-CCGAAAACCCGATTCCAATCTCGGGTTGCTCGGAACATCCGCTCCACCAGGGAGTC 181
| ||||||||||||||||| ||||| ||||| ||||| || || ||||||||||| |
Sbjct 268 -ATACCGAAAACCCGATTCCAGTCTCGCGTTGCCCGGAAAATTCGATCCACCAGGGAAAC 326
Query 182 AAAATGCGATGCAGAAGGCAGGGCATTCCAAAGGCGAACCCTCTGCGTCATCTGGAGGCA 241
||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 327 AAAATGCGATGCATAAGGCAGGGCATTCCAAAGGCGAACCCTCTACCTCATCAGGAGGCA 386
Query 242 AAGTCAAAGATGTTGCTGACCTCAGTGAATCACAGCCAGGAAGTTCGCAGCTGACCATAT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 AAGTCAAAGATGTTGCTGACCTCAGTGAATCACAGCCAGGAAGTTCGCAGCTGACCATAT 446
Query 302 TCTTTGGAGGGAAAGTTTTAGTATATAATGAGTTCCCTGCAGACAAAGCTAAAGAGATTA 361
|||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 447 TCTTCGGAGGGAAAGTTTTAGTATATAATGAGTTCCCCGTAGACAAAGCTAAAGAGATTA 506
Query 362 TGGAAGTAGCAAAACAAGCCAAGCCTCTGACTGAGATTAACATTCAGACACCAATCAATG 421
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 507 TGGAAGTAGCAAAACAAGCCAAGCCTGTGACTGAGATTAACATTCAGACACCAATCAATG 566
Query 422 TCGAAAACAA-AAGCAACATG-GTTCTCCCTGAT-CT-CAATGAGCCTACAGATTCTGCT 477
||||||||| || ||||| | | | | || | || | ||| | | || || ||
Sbjct 567 ACGAAAACAACAA-CAACAAGAG--CAGCATGGTTCTTCC-TGATC-T-CA-ATGA-GCC 618
Query 478 GATACTGATAATAATCACCCTA-CAAAGGAACAACAGCAGCAGCAACAAGAACAAAATCA 536
||||||||||||||||| || ||||||||||||| | ||||||||||||||||||||
Sbjct 619 --TACTGATAATAATCACC-TAACAAAGGAACAACA--A-CAGCAACAAGAACAAAATCA 672
Query 537 GATCGTGGAACGTATAGCACGTAGAGCTTCGCTTCATCGATTCTTTGCTAAACGGAAAGA 596
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 673 GATCGTGGAACGTATAGCACGTAGAGCTTCCCTCCATCGATTCTTTGCTAAACGGAAAGA 732
Query 597 CAGAGCTGTGGCTAGGGCTCCATACCAAGTTAACCAAAACGCGGGACACCATCGTTATCC 656
||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||
Sbjct 733 CAGAGCTGTGGCTAGGGCTCCGTACCAAGTTAACCAAAACGCAGGTCATCATCGTTATCC 792
Query 657 TCCCAAGCCAGAGGCTGTAGCCGGTCAACCACTAGAGCCAGGACAGTCGTCACAAAGACA 716
||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 793 TCCCAAGCCAGAGATTGTAACCGGTCAACCACTAGAGGCAGGACAGTCGTCACAAAGACC 852
Query 717 GCCGGATAATGCCATTGCTCAAACCGTGGCCCA-ACACAAATCAGATGGTGATAAAGATG 775
||||||||| ||||||| ||||||| ||||||| | ||||||||| |||||||||||||
Sbjct 853 GCCGGATAACGCCATTGGTCAAACCATGGCCCATAT-CAAATCAGACGGTGATAAAGATG 911
Query 776 TTATTATGGATATTGAAGAAGGCCAAAGTTCAAAAGATCTCGATCTAAAGCTATAG 831
||||||| | |||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 912 ATATTATGAAGATTGAAGAAGGCCAAAGTTCGAAAGATCTCGATCTAAGGCTATAG 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5