BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312744
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17790.1 | Symbols: | DNA-binding bromodomain-containing pr... 2224 0.0
AT1G73150.1 | Symbols: GTE3 | global transcription factor group... 719 0.0
> AT1G17790.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr1:6125356-6127404 REVERSE LENGTH=1768
Length=1768
Score = 2224 bits (1204), Expect = 0.0
Identities = 1391/1475 (94%), Gaps = 37/1475 (3%)
Strand=Plus/Plus
Query 1 ATGTCTTCTGACCATATATCAGGTGGTGGAGCTTCGAAGACGAAGAAGCATAAGTGGAGC 60
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 129 ATGTCTTCTGAACATATATCAGGTGGTGGAGCTTCAAAGACGAAGAAACATAAGTGGAGC 188
Query 61 TCAAGCCAGAACCGAACCAAACCAATGGTG-GTTTCTAGAAACGAGCGATCGGTTCCTCT 119
||||||||||||||| |||||||||||| | ||||||||| | || ||||| ||||||||
Sbjct 189 TCAAGCCAGAACCGACCCAAACCAATGG-GAGTTTCTAGACAGGAACGATCTGTTCCTCT 247
Query 120 GGTATCTCCTTCGAA--------C-TCGGAGGACGATCATCACATGTTAAAGATAAGTCT 170
|||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 248 TGTATCTCCTTCGAACTCGTTTGCGTCGGAGGACGATCATCACATGTTGAAGATAAGTCT 307
Query 171 GAGCTCGATTTCGAAGCTTGAGGTTAGGAACTTGAAGCGGAAACTAAAATCTGAGCTAGA 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 308 GAGCTCGATTTCGAAGCTTGAGGTTAGGAACTTGAAGCGGAAACTAAAATCTGAGCTTGA 367
Query 231 TGAGGTTAGGAGCTTGATCAAACGGTTCGATCCCGAAGTTAATCTTGGTGGAAATATTGG 290
|||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 368 TGAGGTTAGGAGCTTGATCAAACGGTTCGATCCCGAAGCTAATC---CTGG------TGG 418
Query 291 GTCAATGGCTAAAACTGGTGTTGTAGGGAGAAACAAGAAGCTGAAAACAGGGAATGGAGG 350
|||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 419 GTCAATGGCTAAAAGTGGTGTTGTAGGGAGAAGCAAGAAGGTGAAAACAGGGAATGGAGG 478
Query 351 AGGTAAGAAAAGTGGGCATGGAGCTGATAAAGGTACGGTTCAGATTTTCAAGAACTGTAA 410
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 479 AGGTAAGAAAAGTGGGCATGGAGCTGATAAAGGTACGGTTCAGATTTTTAAGAACTGTAA 538
Query 411 CAGTTTGCTTACGAAATTGATGAAGCATAAGTGTGCATGGGTATTCCATGTCCCAGTGGA 470
||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||
Sbjct 539 CAGTTTGCTTACGAAATTGATGAAGCATAAGAGTGCATGGGTATTCAATGTCCCTGTGGA 598
Query 471 TGCTGAAGGACTTGGCTTGCATGATTATCACAATATTGTTAAAGAGCCTATGGATTTGGG 530
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGCTAAAGGACTTGGCTTGCATGATTATCACAATATTGTTAAAGAGCCTATGGATTTGGG 658
Query 531 TACAGTGAAGACTAAGTTGGGGAAAAGTTTGTATAAGTCGCCATTGGATTTCGCTGAAGA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TACAGTGAAGACTAAGTTGGGGAAAAGTTTGTATAAGTCGCCATTGGATTTCGCTGAAGA 718
Query 591 TGTTAGACTTACTTTTAACAATGCGATTTTGTATAATCCGGTTGGGCATGATGTGCATCG 650
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 719 TGTTAGACTTACTTTTAACAATGCGATTTTGTATAATCCGATTGGGCATGATGTGTATCG 778
Query 651 TTTTGCTGAGCTTTTGTTGAACATGTTTGAAGATAAATGGGTATCCATTGAAATGCAGTA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTTGCTGAGCTTTTGTTGAACATGTTTGAAGATAAATGGGTATCCATTGAAATGCAGTA 838
Query 711 TGATAATCTTCATAGGAAGTTCAAACCAACTCGTGATATTGAGTTCCCTGCTCCTGCTTC 770
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 839 TGATAATCTTCATAGGAAGTTCAAACCAACTCGTGATATTGAGTTCCCTGCTCCTGCTCC 898
Query 771 AACCATTGCTCCTATTGTAGAGCCATTACCAGC-A--GTTCCTACACCA-CCT--TC--C 822
| |||||||||||||||||||||||||||| || | |||||| ||||| || || |
Sbjct 899 ATCCATTGCTCCTATTGTAGAGCCATTACCTGCCATTGTTCCTTCACCATCCCCGTCTTC 958
Query 823 -CCGTC-TCCTCCTCCACCACCAC-A--A-C--CTCCGGTACTTGAAAATAGGACTTGGG 874
|| || |||||||||||| |||| | | | |||||||||||||||||||||||||||
Sbjct 959 TCC-TCCTCCTCCTCCACCGCCACCAGTAGCAGCTCCGGTACTTGAAAATAGGACTTGGG 1017
Query 875 AGAGAGAAGAATCTATGACAATCCCAGTGGAACCTGAAGCTGTAACTACTGCTCCCGACA 934
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| || |
Sbjct 1018 AGAGAGAAGAATCTATGACAATCCCTGTGGAACCTGAAGCTGTAATTACTGCTCCAGAGA 1077
Query 935 AAGCTGAAGAAGAGGAAGCACCTGTTAACAACAGGGACCTCACTTTGGAAGAGAAACGGA 994
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1078 AAGCTGAAGAAGAGGAAGCACCTGTTAACAACAGGGACCTCACCTTGGAAGAGAAACGGA 1137
Query 995 GACTCAGTGAAGAGCTTCAGGACTTGCCTTATGACAAACTAGAGACTGTTGTTCAGATCA 1054
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GACTCAGTGAAGAGCTTCAAGACTTGCCTTATGACAAACTAGAGACTGTTGTTCAGATCA 1197
Query 1055 TAAAGAAGAGCAATCCAGAGCTCTCTCAACAAGATGATGAGATTGAGCTGGATATTGATA 1114
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1198 TAAAGAAGAGCAATCCAGAGCTCTCTCAAAAAGATGATGAGATTGAGCTGGATATTGATA 1257
Query 1115 GTCTTGATATCAACACGCTTTGGGAGCTTTATAGATTTGTGACTGGGTATAAGGAGAGCT 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GTCTTGATATCAACACGCTTTGGGAGCTTTATAGATTTGTGACTGGGTATAAGGAGAGCT 1317
Query 1175 TGAGCAAGAAAAACGTGGCTCAGGGATTTGGTTCAGAAAGAGATGCTGAATCTGTTCACA 1234
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1318 TGAGCAAGAAAAACGAGGCTCATGGATTTGGTTCAGAAAGAGATGCTGAATCTGTTCACA 1377
Query 1235 ATAGTATTCAAGAACCAACCACTCTAGTAACTGGCACCAAAACATCGAGAGTTACTGAAT 1294
|||||||||||||||| |||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 1378 ATAGTATTCAAGAACCTACCACTTTAGTAAGTGGCACCACAACATCGAGAGTTACTGAAT 1437
Query 1295 CAGGAAAAGCAATTCGTACATCATCTCCTGGTCGGCAAGAAAACAATGCAAGTGGATCAA 1354
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1438 CAGGAAAAGCAATTCGCACATCATCTCCTGCTCGGCAAGAAAACAATGCAAGTGGATCAA 1497
Query 1355 GTAGTTCTAACAGTTCTAGTAGTGACTCAGGATCTTGCTCTAGTGATTCTGATAGTGACA 1414
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1498 GTAGTTCTAACAGTTCTAGTAGTGACTCAGGATCTTGCTCTAGTGATACTGACAGTGACA 1557
Query 1415 GCTCCTCAGGACGTGGATCAGATAATGGTAATTAG 1449
|||| ||||||||||||||||||||||||||||||
Sbjct 1558 GCTCTTCAGGACGTGGATCAGATAATGGTAATTAG 1592
> AT1G73150.1 | Symbols: GTE3 | global transcription factor group
E3 | chr1:27504112-27506112 REVERSE LENGTH=1717
Length=1717
Score = 719 bits (389), Expect = 0.0
Identities = 918/1161 (79%), Gaps = 86/1161 (7%)
Strand=Plus/Plus
Query 322 AACAAGAAGCTGAAAACAGGGAATGGA-GGAGGTAAGAAAAGTGG-G--CATGGA----- 372
|||||||||||||||||| | || | || ||||||||| |||| | ||||||
Sbjct 393 AACAAGAAGCTGAAAACA-GCAA---ACGGTGGTAAGAAAGGTGGAGTACATGGAGCTGC 448
Query 373 -GCTGATAAAGGTACGGTTCAGATTTTCAAGAACTGTAACAGTTTGCTTACGAAATTGAT 431
|||||||||||||| ||||||||||| |||| ||| |||| ||||||||| || || ||
Sbjct 449 TGCTGATAAAGGTACTGTTCAGATTTTGAAGAGCTGCAACAATTTGCTTACCAAGTTAAT 508
Query 432 GAAGCATAAGTGTGCATGGGTATTCCATGTC-CCAGTGGATGCT-G-AAGGACTTGGCTT 488
||||||||||| || |||| | ||| || | ||||| |||| | | | | ||||| ||
Sbjct 509 GAAGCATAAGTCTGGATGGATTTTCAAT-ACTCCAGTTGATG-TAGTTACG-CTTGGTTT 565
Query 489 GCATGATTATCACAATATTGTTAAAGAGCCTATGGATTTGGGTACAGTGAAGACTAAGTT 548
|||||||||||||||||| |||| |||||||||||||| || ||||||||||||| |||
Sbjct 566 ACATGATTATCACAATATTATTAAGGAGCCTATGGATTTAGGAACAGTGAAGACTAGGTT 625
Query 549 GGGGAAAAGTTTGTATAAGTCGCCATTGGA-TTTCGCTGAAGATGTTAGACTTACTTTTA 607
| | || |||||||||||||| || ||||| ||| ||||| ||||| |||||||||||||
Sbjct 626 GAGTAAGAGTTTGTATAAGTCACCTTTGGAGTTT-GCTGAGGATGTCAGACTTACTTTTA 684
Query 608 ACAATGCGATTTTGTATAATCCGGTTGGGCATGATGTGCATCGTTTTGCTGAGCTTTTGT 667
||||||| || |||||||||| || |||||||||||| ||| | | |||||| ||||||
Sbjct 685 ACAATGCAATGCTGTATAATCCTGTGGGGCATGATGTGTATCATATGGCTGAGATTTTGT 744
Query 668 TGAA-CATGTTTGAAGATAAATGGGTATCC-ATTGAAATGCAGTATGA-TAATCTTCA-T 723
|||| | |||||||||| |||||||| || |||||| ||||||||| | | ||| | |
Sbjct 745 TGAATC-TGTTTGAAGAGAAATGGGT-GCCTCTTGAAACGCAGTATGAGTTA-CTT-ATT 800
Query 724 AGGAAGTTC-A-AACCAACT-CGTGATATTGAGTTCCCTGCTCCTGCTTCAACCATTGCT 780
|||||| | | |||| | | |||||||| || |||| |||||||| ||| || | ||
Sbjct 801 AGGAAG--CAACAACC-AGTCCGTGATATCGATTTCCATGCTCCTGTTTCGACAAACACT 857
Query 781 CCTATTGTAGAGCCATTACC---AGCAGTTCCTACACCACCTTCCCCGTCTCCTCCTCCA 837
| || ||||||| | ||||| | | | |||| | ||||||||| ||||||||||||
Sbjct 858 CATAATGTAGAGGCGTTACCGTTACCCGCTCCT--A-CACCTTCCCTGTCTCCTCCTCCT 914
Query 838 CCACCACAACCTCCGGTACTTGAAAATAGGACTTGGGAGAGAGAAGAATCTATGACAATC 897
|| || || ||| ||||||||||||||| |||||||| ||||||||||||| |
Sbjct 915 CCTCC-TAA-----AGTAGTTGAAAATAGGACTTTGGAGAGAGCTGAATCTATGACAAAC 968
Query 898 CCAGTGGAACCTGAAGCTGTAACTACTGCT-CCCGACAAAGC-TGAAGAAGAGGAAGCAC 955
|||||| |||||| || | || || || | ||||| |||| || |||||| | ||
Sbjct 969 CCAGTGAAACCTGCAGTTTTACCTGTTG-TCCCCGA-GAAGCTTGTAGAAGA-G--GCGT 1023
Query 956 CTGTTAACAACAGGGACCTCAC-TTTGGAAGAGAAACGG-AGACTCAGTGAAGAGCTTCA 1013
||| | ||||||||| | || ||| || ||||| ||| | ||| |||||||| || ||
Sbjct 1024 CTG--CA-AACAGGGACTTGACGTTT-GATGAGAAGCGGCA-ACTAAGTGAAGACCTCCA 1078
Query 1014 GGACTTGCCTTATGACAAACTAGAGACTGTTGTTCAGATCATAAAGAAGAGCAA-TCCAG 1072
||| || ||||||||||| |||||| | ||||| ||||| ||||||||||| || |||||
Sbjct 1079 GGATTTACCTTATGACAAGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAG-AACTCCAG 1137
Query 1073 AGCTCTCTCAACAAGATGATGAGATTGAGCTGGATATTGATAGTCTTGATAT-CAACACG 1131
| ||||||||||||||||||||||||||| | |||||||||||||||||| | || ||
Sbjct 1138 AACTCTCTCAACAAGATGATGAGATTGAGTTAGATATTGATAGTCTTGATCTGGAA-ACA 1196
Query 1132 CTTTGGGAGCTTTAT-AGATTTGTGACTGGGTATAAGGAGAGCTTGAGCAAGAAAAACGT 1190
||||||||||||| | ||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct 1197 CTTTGGGAGCTTT-TCAGATTCGTGACTGAATATAAGGAGAGCTTAAGCAAGAAAAAGGA 1255
Query 1191 GGCTCAGGGATTTGGTTCAGAAAGAGATGCTGAATCTGTTCACAATAGTATTCAAGAA-C 1249
|| |||||||| | ||||||||||||||||||||| ||||||||||| | || ||| |
Sbjct 1256 GGAACAGGGATTAGACTCAGAAAGAGATGCTGAATCTTTTCACAATAGTGTGCACGAATC 1315
Query 1250 CAACCACTCTAGTAACTGGCAC-CAAAACATCGAGAGTTACTGAATCAGGAAAAGCAATT 1308
|| ||| |||||||||||| | || | || | ||||||||||| ||| | | |
Sbjct 1316 GAA-CACGCTAGTAACTGGC-CTTGAATCGTCAAAAGTTACTGAATTAGG----TC-A-T 1367
Query 1309 CGTACATCATCTCCTGGTCGGCAAGAA-AACAATGCAAGTGGATCAAGTAGTTCTAACAG 1367
|| ||||| ||| ||| |||||| | |||| | ||||||||||||||||||||
Sbjct 1368 -GT--GGCATCTACTGTTCGACAAGAAGTA-AATGTTGGAGGATCAAGTAGTTCTAACAG 1423
Query 1368 TTCTAGTAGTGACTCAGGATCTTGCTCTAGTGATTCTGATAGTGACAGCTCCTCAGGACG 1427
||||||||||| |||||| || | ||||||| ||||| ||||| ||||| |||||
Sbjct 1424 TTCTAGTAGTGGCTCAGGCTCGGGTTCTAGTGGCTCTGACAGTGATAGCTC---AGGACA 1480
Query 1428 TGGATCAGATAATGGTAATTA 1448
|| ||| |||| ||||||||
Sbjct 1481 TGAATCTGATACCGGTAATTA 1501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5