BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312752
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17880.1 | Symbols: BTF3, ATBTF3 | basic transcription facto... 800 0.0
AT1G73230.1 | Symbols: | Nascent polypeptide-associated comple... 551 2e-156
> AT1G17880.1 | Symbols: BTF3, ATBTF3 | basic transcription factor
3 | chr1:6152409-6153982 REVERSE LENGTH=778
Length=778
Score = 800 bits (433), Expect = 0.0
Identities = 477/498 (96%), Gaps = 3/498 (1%)
Strand=Plus/Plus
Query 1 ATGAATAGGGAAAAGTTGATGAAGATGGCTAACACTGTCCGCACTGGCGGAAAGGGTACC 60
||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 118 ATGAATAGGGAGAAGTTGATGAAGATGGCTAATACCGTCCGCACTGGCGGAAAGGGTACT 177
Query 61 GTCAGAAGAAAGAAGAAGGCTGTGCACAAGACCAATACAACTGATGACAAGAGGCTCCAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 GTCAGAAGAAAGAAGAAGGCTGTGCACAAGACCAATACAACTGATGACAAGAGGCTTCAA 237
Query 121 AGCACTCTTAAGAGAATTGGAGTTAACTCCATTCCAGCAATTGAAGAAGTTAACATCTTT 180
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 238 AGCACTCTTAAGAGAATTGGAGTTAACTCCATTCCCGCTATTGAAGAAGTTAACATCTTT 297
Query 181 AAGGATGATGTTGTTATCCAATTCATCAACCCTAAGGTTCAAGCTTCAATTGCTGCAAAC 240
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAGGATGATGTTGTTATTCAGTTCATCAACCCTAAGGTTCAAGCTTCAATTGCTGCAAAC 357
Query 241 ACATGGGTTGTTAGCGGTTCTCCTCAGACCAAAAAATTGCAAGATATCCTTCCTCAGATT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACATGGGTTGTTAGCGGTTCTCCTCAGACCAAAAAATTGCAAGATATCCTTCCTCAGATC 417
Query 301 ATCAGCCAACTTGGACCAGACAACATGGACAACCTGAAGAAGCTAGCAGAGCAGTTCCAG 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 ATCAGCCAACTTGGACCAGACAACATGGACAACCTGAAGAAGCTAGCAGAACAGTTCCAG 477
Query 361 AAACAGTCTCCTGGTGAAGGTAA-G--GCCTCAGCAACCATACAAGAGGAAGATGATGAC 417
|||||| || ||||||||||||| | |||||||||||||||||||| || |||||||||
Sbjct 478 AAACAGGCTTCTGGTGAAGGTAATGCCGCCTCAGCAACCATACAAGAAGAGGATGATGAC 537
Query 418 GATGTCCCAGAGCTAGTTGGAGAGACATTCGAAGCTGCTGCTGAAGAGAAAGTACCAGCT 477
|||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 538 GATGTCCCAGAGCTTGTTGGAGAGACATTCGAAACTGCTGCTGAAGAGAAAGCACCAGCT 597
Query 478 GCTGCTGCTTCTTCTTAG 495
||||||||||||||||||
Sbjct 598 GCTGCTGCTTCTTCTTAG 615
> AT1G73230.1 | Symbols: | Nascent polypeptide-associated complex
NAC | chr1:27540228-27541944 REVERSE LENGTH=901
Length=901
Score = 551 bits (298), Expect = 2e-156
Identities = 419/476 (88%), Gaps = 13/476 (3%)
Strand=Plus/Plus
Query 1 ATGAATAGGGAAAAGTTGATGAAGATGGCTAACACTGTCCGCACTGGCGGAAAGGGTACC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 126 ATGAATAGGGAAAAGTTGATGAAGATGGCTAACACTGTCCGCACTGGCGGAAAGGGGACA 185
Query 61 GTCAGAAGAAAGAAGAAGGCTGTGCACAAGACCAATACAACTGATGACAAGAGGCTCCAA 120
|| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct 186 GTAAGAAGAAAGAAGAAGGCTGTTCACAAGACCACTACAACCGATGACAAGAGGCTCCAG 245
Query 121 AGCACTCTTAAGAGAATTGGAGTTAACTCCATTCCAGCAATTGAAGAAGTTAACATCTTT 180
||||||||||||||| ||||||| || |||||||| || ||||||||||||||||| |||
Sbjct 246 AGCACTCTTAAGAGAGTTGGAGTCAATTCCATTCCCGCCATTGAAGAAGTTAACATTTTT 305
Query 181 AAGGATGATGTTGTTATCCAATTCATCAACCCTAAGGTTCAAGCTTCAATTGCTGCAAAC 240
||||||||||| || || || ||||| |||||||| |||||||||||||||||||| |||
Sbjct 306 AAGGATGATGTAGTCATTCAGTTCATTAACCCTAAAGTTCAAGCTTCAATTGCTGCTAAC 365
Query 241 ACATGGGTTGTTAGCGGTTCTCCTCAGACCAAAAAATTGCAAGATATCCTTCCTCAGATT 300
||||||||||| || ||| | || ||||| |||||||||||||| || ||||||||||||
Sbjct 366 ACATGGGTTGTGAGTGGTACACCACAGACGAAAAAATTGCAAGACATTCTTCCTCAGATT 425
Query 301 ATCAGCCAACTTGGACCAGACAACATGGACAACCTGAAGAAGCTAGCAGAGCAGTTCCAG 360
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 426 ATCAGCCAACTTGGACCAGATAACTTGGACAACCTGAAGAAGCTAGCAGAGCAATTCCAG 485
Query 361 AAACA-GTCTCCTGGTGAAGGTAAGG-CCTCAGCAACCATACAAGAGGA--A-GATGATG 415
||||| | |||| |||| |||| | | || ||||||| || ||||| || | |||||||
Sbjct 486 AAACAAG-CTCCAGGTGCAGGTGATGTCC-CAGCAACAATCCAAGAAGAGGACGATGATG 543
Query 416 ACGATGTCCCAGAGCTAGT--TGG-AGAGACATTCGA-AGC--TGCTGCTGAAGAG 465
| ||||||||||| || || ||| |||||| ||||| | | |||| ||||||||
Sbjct 544 ATGATGTCCCAGATCTTGTAGTGGGAGAGACTTTCGAGACCCCTGCTACTGAAGAG 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23610049090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5