BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312759
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17970.1 | Symbols: | RING/U-box superfamily protein | chr1... 553 1e-156
> AT1G17970.1 | Symbols: | RING/U-box superfamily protein | chr1:6184904-6187472
FORWARD LENGTH=1505
Length=1505
Score = 553 bits (299), Expect = 1e-156
Identities = 345/368 (94%), Gaps = 0/368 (0%)
Strand=Plus/Plus
Query 717 GATGATGATGCTCCAGAATGGTTTCGTAATGGGAAGAATAACAGATTCCCGTGATCACTA 776
||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 866 GATGAGGATGCTCCAGAATGGTTTTGTAATGGGAAGAATAACAGATTCCCGTGATAACTA 925
Query 777 CCATGAATTGAGGCTCGATGTTGATAGCATGTCATACGAGCAACTTCTTGAGCTTAGTGA 836
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 926 CCACGAATTGAGGCTCGATGTTGATAGCATGTCATACGAGCAACTTCTTGAGCTTGGTGA 985
Query 837 TAGGATTGGTTATGTGAATACTGGACTTAAAGAAAGCGAGATACATCGCTGTCTTGGGAA 896
||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 986 TAGAATTGGTTATGTGAATACTGGACTAAAAGAAAGCGAGATACATCGTTGTCTTGGGAA 1045
Query 897 AATCACACCCTCCATATCACATACTCTTGGTGATAGAAAATGTAGCATTTGTCAGGATGA 956
||||| ||| ||| ||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1046 AATCAAACCATCCGTATCACATACTCTTGTTGATAGAAAATGTAGCATCTGTCAGGATGA 1105
Query 957 GTATGAGAGTGAGGATGAGGTTGGGAAATTAAACTGTGGACACAGCTTTCATGTTCATTG 1016
||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||||
Sbjct 1106 GTATGAGAGAGAGGATGAGGTTGGGGAATTGAACTGTGGACACAGCTTTCATGTCCATTG 1165
Query 1017 CGTAAAACAATGGCTATCGAGGAAGAATGCTTGCCCGGTCTGTAAGAAGACAGCATACGT 1076
||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 1166 CGTGAAACAATGGCTTTCGAGGAAGAATGCTTGTCCGGTCTGTAAGAAGGCAGCATATGG 1225
Query 1077 CAAGCCTT 1084
||||||||
Sbjct 1226 CAAGCCTT 1233
Score = 501 bits (271), Expect = 6e-141
Identities = 544/660 (82%), Gaps = 82/660 (12%)
Strand=Plus/Plus
Query 69 CCATGTCGTTCTTCCGATTTCTCAACCTAATCGGTTCTGTAACTCCGCAATGTCTTCCTT 128
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 227 CCACGTCGTTCTTCCGATTTCACAACCTAATCGCTTCTGTAACTCCGCAATGTCTTCCTT 286
Query 129 CTTTCTCCTCCCGACTTCCTCCTCCAACGAAACCACCAGGAAGAAACCGTACCAAACGTC 188
||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 287 CTTTCCCCTCCCGACTTCCTCCTCCAACGAAAGCACGAGGAAGAAACCGTACCAAACGTC 346
Query 189 GTCGTTTCGTGGTATGGGTTGC-ACTG-C-C-GCAGCAGCAGCAGCTCAGGAGGTTTCTG 244
||||||||| || ||||||||| | || | | ||||||||||||||||| ||||||||||
Sbjct 347 GTCGTTTCGAGGGATGGGTTGCTA-TGCCGCAGCAGCAGCAGCAGCTCAAGAGGTTTCTG 405
Query 245 TTCCCTCCGTGATTCGCTCA-TCTGCAGATTGGGATGCCagaatcagaaaagat------ 297
|||||||||| ||||||| | || || |||| |||||||||||| |||||||||
Sbjct 406 TTCCCTCCGTCATTCGCT-ACTCCGCGGATTTGGATGCCAGAATTAGAAAAGATAAGAAG 464
Query 298 aagaagaag---aagcat------aagaaaaagaagaacaaaggaagctacgaagaTGGT 348
||||||||| |||||| |||||||||||||| |||||||||||||||||||||
Sbjct 465 AAGAAGAAGCATAAGCATAAGAAAAAGAAAAAGAAGAATAAAGGAAGCTACGAAGATGGT 524
Query 349 TCGATTAGGATCTTAAACGAAGCTAGAGACGTTGATGGTGGTGGTTGCGTCGCGATTCCT 408
||||||||||| |||| ||||| | || | | | | | ||| | | |
Sbjct 525 TCGATTAGGATTTTAAGCGAAG--A-AG-C--T-A-----G-AG--ACGT---TA-T--T 563
Query 409 GATGTTTGGTGCGGACCTGGACTAGGCTTCTCGACGGATGCTGTAGTTGATCGATCGGTC 468
|||||||||||| |||||||| |||||||||| |||||||||||| ||| |||||||||
Sbjct 564 GATGTTTGGTGCAGACCTGGATTAGGCTTCTCCACGGATGCTGTAATTGGTCGATCGGTT 623
Query 469 GATCCTCCTCGGAGAAAGAATATTCCGTCGTCTCGTCGCAAAATTGATGTGGAT---AAC 525
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 624 GATCCTCCTCGGGGAAGGAATATTCCGTCGTCTCGTCGCAAAATTGATGTGGATAACAAC 683
Query 526 ------AA-CACACA--GGGTTCTTCTG----------TC-G-------ATCAAGAATCT 558
|| |||||| ||||||||||| || | |||||||| ||
Sbjct 684 AATTATAATCACACACTGGGTTCTTCTGTTCTTCCCATTCGGTTTCTCAATCAAGAAACT 743
Query 559 CATTCTCATGCTTTCTTCAACTCTGATTCGACTTTTGTGACATCATCACGCGCTGAACCA 618
|||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 744 CATTCTCATGATATCTTCAACTCTGATTCTACTTTTGTGACATCATCACGCGCTGAACCA 803
Query 619 AC-A-------A-GTAGATGTCGTGGCCATCTTCGACGCTCTTACCGTGATGATCTTACC 669
|| | | ||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 804 ACGATGTTGTCAAGTAGATGTCGTGGCCATCTTCCACGCTCTTACCCTGATGATCTTACC 863
Score = 121 bits (65), Expect = 2e-26
Identities = 69/71 (97%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTCGACAACAATCGGCGAACACATCAGACTCCGACGAGCTAGAAACCAAACAATC 60
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 129 ATGTCTTCTACAACAATCGGCGAGCACATCAGACTCCGACGAGCTAGAAACCAAACAATC 188
Query 61 CGTCATCTCCA 71
|||||||||||
Sbjct 189 CGTCATCTCCA 199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5