BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312763
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18030.1 | Symbols: | Protein phosphatase 2C family protein... 1447 0.0
AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:6187... 141 1e-32
> AT1G18030.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:6204343-6206988 FORWARD LENGTH=1423
Length=1423
Score = 1447 bits (783), Expect = 0.0
Identities = 832/856 (97%), Gaps = 2/856 (0%)
Strand=Plus/Plus
Query 172 AAGAAGGAGTTTCTCGTTGAAGCTGGTGTTGCTGAAGACAAAGGAGCTAGACATACGATG 231
|||||||||||||| || ||||||| |||||||||||||||||||||||||||||| |||
Sbjct 259 AAGAAGGAGTTTCTGGTCGAAGCTGATGTTGCTGAAGACAAAGGAGCTAGACATACTATG 318
Query 232 GAAGATGTATGGGTGGTTTTGCCTGACGCTTCTTTGGATTTCCCAGGGACACTAAGGTGT 291
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GAAGATGTTTGGGTGGTTTTGCCTGACGCTTCTTTGGATTTCCCAGGGACACTAAGGTGT 378
Query 292 GCGCATTTTGCAATTTATGATGGGCATGGAGGTCGTTTAGCTGCAGATTTTGCTAAGAAG 351
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 379 GCGCATTTTGCAATTTATGATGGGCATGGAGGTCGTTTAGCTGCAGAGTTTGCTAAGAAG 438
Query 352 CATCTTCACCTTAATGTTCTTTCAGCTGGGTTACCACGTGAGTTGCTGGATGTCAAAGTT 411
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CATCTTCACCTTAACGTTCTTTCAGCTGGGTTACCACGTGAGTTGCTGGATGTCAAAGTT 498
Query 412 GCTAAAAAGGCCATTCTTGAAGGTTTCCGGAAAACCGATGAGTTGCTCCTGCAAGAAAGT 471
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 499 GCTAAAAAGGCCATTCTTGAAGGTTTCCGGAAAACTGATGAGTTGCTCCTGCAAAAAAGT 558
Query 472 ATTTCAGGAGGATGGCAAGATGGCGCCACAGCAGTGTGTGTCTGGATACTTGATCAAAAG 531
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 559 GTTTCAGGAGGATGGCAAGATGGAGCCACAGCAGTCTGTGTCTGGATACTTGATCAAAAG 618
Query 532 GTTTTTGTTGCCAATATCGGTGATGCTAAGGCTGTTTTGGCACGATCATCTGCTACCAAC 591
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 619 GTTTTTGTTGCCAATATCGGTGATGCTAAGGCTGTTTTGGCACGATCCTCTACTACCAAC 678
Query 592 GAGTTGGAGAATCATACAGAAGCATGTAATCCACTCAAAGCAATTGTTTTGACGAGAGAG 651
|| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 679 GAATTGGGGAATCATACAGAAGCAGGTAATCCACTCAAAGCAATTGTTTTGACGAGAGAG 738
Query 652 CACAAAGCAATTTATCCACAGGAGCGCTCTCGAATTCAGAAGTCAGGTGGTGTTATAAGC 711
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 739 CACAAAGCAATTTATCCACAGGAGCGCTCTCGCATTCAAAAGTCAGGTGGTGTTATAAGC 798
Query 712 TCAAATGGACGGTTACAAGGGCGTCTTGAGGTTTCTAGGGCTTTTGGTGATCGTCAATTT 771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 799 TCAAATGGACGGTTACAAGGGCGTCTTGAGGTTTCTAGGGCTTTTGGTGATCGTCATTTT 858
Query 772 AAGAAGTTTGGTGTCAGTGCAACTCCAGACATTCATGCTTTTGAATTAACTGAGAGAGAA 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 AAGAAGTTTGGTGTCAGTGCAACTCCAGACATTCATGCTTTTGAATTAACTGAGAGAGAA 918
Query 832 AACTTCATGATTCTTGGTTGCGATGGATTGTGGGAAGTGTTTGGACCAAGTGATGCTGTT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 AACTTCATGATTCTTGGTTGCGATGGATTGTGGGAAGTGTTTGGACCAAGTGATGCTGTT 978
Query 892 TGG-TTTGTCCAGAAACTTTTGAAGGAGGGCTTGCCTGTAAGCACGGTAAGTCGCCGTCT 950
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 979 -GGATTTGTCCAGAAACTTTTGAAGGAGGGCTTGCATGTAAGCACGGTAAGTCGCCGTCT 1037
Query 951 TGTAAAGGAAGCTGTGAAAGAACGTCGTTGCAAAGACAACTGCACAGCAATCGTGATAGT 1010
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TGTGAAGGAAGCTGTGAAAGAACGTCGTTGCAAAGACAACTGCACAGCAATCGTGATAGT 1097
Query 1011 CTTCAAGCGGGTATGA 1026
||||||||||||||||
Sbjct 1098 CTTCAAGCGGGTATGA 1113
Score = 237 bits (128), Expect = 2e-61
Identities = 162/177 (92%), Gaps = 7/177 (4%)
Strand=Plus/Plus
Query 2 TGGAGAAGGAATCTCATTTGACTGCAAAGGAGAAACCAAATAACAAGCACGCGGCTGATT 61
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 62 TGGAGAAGGAATCTGATTTGACTGCAATGGAGAAACCAAATAACAAGCACGCGGCTGATT 121
Query 62 CGTTTTCCAGCGAGGAATTGGTCCCACCGGTGAAGAAGGCAAAGAAGTCAGAGGAGACTG 121
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 122 CGTTTTCCAGCGAGGATTTGGTCTCACCGGTGAAGAAGGCAAAGAAGTCAGAGGAG---G 178
Query 122 GATGTTCCGATGGAGGAGAAGCCGTAGCCGCCGTTGGTAATAGAGAGGAG-AAGAAG 177
| ||||| ||||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct 179 --T-TTCCGGCGGAGGAGAAGCTGTAGCCGCCGTTGGTAATAGAGAGGCGGAAGAAG 232
> AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:6187507-6191708
REVERSE LENGTH=2667
Length=2667
Score = 141 bits (76), Expect = 1e-32
Identities = 89/95 (94%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 2 TGGAGAAGGAATCTCATTTGACTGCAAAGGAGAAACCAAATAACAAGCACGCGGCTGATT 61
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 86 TGGAGAAGGAATCTGATTTGACTGCAACGGAGAAACCAAATAACAAGCACGCGGCTGATT 145
Query 62 CGTTTTCCAGCGAGGAATTGGTCCCAC-CGGTGAA 95
|||||||||||||||| |||||| ||| ||| |||
Sbjct 146 CGTTTTCCAGCGAGGATTTGGTCTCACGCGGAGAA 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5