BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312784
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18300.1 | Symbols: atnudt4, NUDT4 | nudix hydrolase homolog... 1048 0.0
AT1G73540.1 | Symbols: atnudt21, NUDT21 | nudix hydrolase homol... 348 4e-95
> AT1G18300.1 | Symbols: atnudt4, NUDT4 | nudix hydrolase homolog
4 | chr1:6299687-6301086 FORWARD LENGTH=1065
Length=1065
Score = 1048 bits (567), Expect = 0.0
Identities = 605/624 (97%), Gaps = 0/624 (0%)
Strand=Plus/Plus
Query 1 ATGACAGGCTTCTCTGTGTCTCTTTTCGTCTCAAACTTGTCAAATGTGGCCTCGTATTTG 60
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 155 ATGACAGGGTTCTCTGTGTCTCTTTTTGTGTCAAACTTGTCAAATGTGGCCTCGTATTTG 214
Query 61 TCGCCCATCTTCGAGAACATCCCCTCCACCAAGGTTGTTCCCGCACAGATCGAGAAAGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 TCGCCCATCTTCGAGAACATCCCCTCCACCAAGGTTGTTCCCGCACAGATCGAGAAAGTT 274
Query 121 GTCTCTTTGGTCTCTCGTACCGGTCGCGATTTGCAGCGTTACGATAACGCTGGCTATCGT 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 275 GTCTCTTTGGTCTCTCGTACCGGTCGCGATTTGCAGCGTTACGATCACGCTGGCTATCGT 334
Query 181 CAAGTCGTCGGATGTGTACCGTACAGATACAAGAAACAAGAAGTCAATGGAATTGAAACC 240
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 335 CAAGTCGTCGGATGTGTACCGTATAGATACAAGAAACAAGAAGTCAATGGAGTTGAAACC 394
Query 241 CAAGAAATCCAAGTTCTTCTTGTCAGTGCTCAAAAGGGCAAAGGAATGTTATTTCCAAAA 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 CAAGTAATCCAAGTTCTTCTTGTCAGTGCTCAAAAGGGCAAAGGAATGTTATTTCCAAAA 454
Query 301 GGAGGTTGGGAGACGGATGAATCAATGGAGGAAGCAGCTTTGAGAGAGACAATCGAAGAA 360
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 455 GGAGGTTGGGAGACGGATGAATCAATGGAGGAAGCTGCTTTGAGAGAGACGATCGAAGAA 514
Query 361 GCGGGTGTAACGGGAGAGCTCGAAGAAAAGCTTGGGAAATGGCAATACAAAAGCAAAAGA 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GCGGGTGTAACAGGAGAGCTCGAAGAAAAGCTTGGGAAATGGCAATACAAAAGCAAAAGA 574
Query 421 CATTGCATAATTCACGATGGATACATGTTTGCTTTGCTTGTTAGTCAAGAGTTCGAGCGA 480
||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 575 CATAGCATAATTCACGATGGGTATATGTTTGCTTTGCTTGTCAGTCAAGAGTTCGAGCGA 634
Query 481 TGGCCTGAGGCGGAGATTAGACAACGCAGATGGGTAAGTTTGGACGAAGCAAGAGAAGTA 540
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 635 TGGCCTGAGGCGGAAATGAGACAACGCAGATGGGTAAGTTTGGATGAAGCAAGAGAAGTA 694
Query 541 TGTCAGAATTGGTGGATGAGAGAAGCTCTTGAAGCATTCATTAACCTGAAATGTGTCGCT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 695 TGTCAGAATTGGTGGATGAGAGAAGCTCTTGAAGCATTCATTAACCTGAAATGTCTAGCT 754
Query 601 GACGATGATGAAAGTGGGAACTGA 624
||||||||||||||||||||||||
Sbjct 755 GACGATGATGAAAGTGGGAACTGA 778
> AT1G73540.1 | Symbols: atnudt21, NUDT21 | nudix hydrolase homolog
21 | chr1:27645658-27646698 REVERSE LENGTH=946
Length=946
Score = 348 bits (188), Expect = 4e-95
Identities = 399/495 (81%), Gaps = 38/495 (8%)
Strand=Plus/Plus
Query 112 GAGAAAGTTGTCTCTTTGGTCTCTCGTACCGGTCGCGATTTGCAGCGTTACGATAACGCT 171
|||||||||||||||||||| ||||| ||||| || ||| | || |||||| | | |||
Sbjct 242 GAGAAAGTTGTCTCTTTGGTATCTCGAACCGGACGAGATCTCCAACGTTACAACACCGCA 301
Query 172 GGCTATCGTCAAGTCGTCGGATGTGTACCGTACAGATACAAGAAACAAGAAGTCAATGGA 231
|| |||||||||||||||||||||||||| || |||||||||||||| | | | ||
Sbjct 302 GGGTATCGTCAAGTCGTCGGATGTGTACCATATAGATACAAGAAACACG--G---A-GG- 354
Query 232 ATTGAAACCCAAGAAATCCAAGTTCTTCTTG-TCAGTGCTC---A-AAAGGGCAAAGGAA 286
| | |||||| |||| ||| ||| | ||||| | | |||||| |||||||
Sbjct 355 A--G------GAGAAATTGAAGTGCTT-TTGATAAGTGCACAGAAGAAAGGG-AAAGGAA 404
Query 287 TGTTATTTCCAAAAGGAGGTTGGGAGACGGATGAATCAATGGAGGAAGCAGCTTTGAGAG 346
||||||| ||||||||||||||||||| ||||||||||| || ||||| ||||| ||||
Sbjct 405 TGTTATTACCAAAAGGAGGTTGGGAGATTGATGAATCAATAGAAGAAGCTGCTTTAAGAG 464
Query 347 AGACAATCGAAGAAGCGGGTGTAACGGGAGAGCTCGAAGAA-AAGCTTGGGAAATGGCAA 405
||||||| |||||||| ||||| ||||| |||| |||||| | |||||||||||||||
Sbjct 465 AGACAATTGAAGAAGCTGGTGTTACGGGTCAGCTTGAAGAATCA-CTTGGGAAATGGCAA 523
Query 406 TACAAAAGCAAAAGACATTGC-ATAATTCACGATGGAT-ACATGTTTGCTTTGCTTGTTA 463
|||||||||||||||||| | || ||||| ||||| | | |||||| ||||||||||||
Sbjct 524 TACAAAAGCAAAAGACATA-CTATGATTCATGATGG-TCATATGTTTCCTTTGCTTGTTA 581
Query 464 GTCAAG-AGTTCGAGCGATGGCCTGAGGCGGAGATT-AGACAACGCAGATGGGTAAGTTT 521
|||| | |||| ||| ||||||||| | || ||| |||||||||| |||||| |||
Sbjct 582 GTCA-GCAGTTTGAGATATGGCCTGAATCTGA-ATTCAGACAACGCAAATGGGTTTCTTT 639
Query 522 GGAC-GAAGCAAGAGAAGTA-TGTCAGAATTGGTGGATGAGAGAAGCTCTTG-AAGCATT 578
| | ||||| | || || |||||||||| |||||||||||||||| ||| |||| ||
Sbjct 640 GT-CTGAAGCGATTGA-GTTGTGTCAGAATTCGTGGATGAGAGAAGCT-TTGGAAGCTTT 696
Query 579 CATTAACCTGAAATG 593
|||||||| ||||||
Sbjct 697 CATTAACCGGAAATG 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5