BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312791
Length=3432
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18390.2 | Symbols: | Protein kinase superfamily protein | ... 1803 0.0
AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 | chr1:6... 1232 0.0
AT1G18382.1 | Symbols: | other RNA | chr1:6326366-6326699 REVE... 137 6e-31
> AT1G18390.2 | Symbols: | Protein kinase superfamily protein
| chr1:6327463-6330098 FORWARD LENGTH=2128
Length=2128
Score = 1803 bits (976), Expect = 0.0
Identities = 1075/1124 (96%), Gaps = 1/1124 (0%)
Strand=Plus/Plus
Query 1513 ATAGCTGCGAGCATCTTTTGGTATGTGTATCATCGTAGAAAAACAAAAAGTTACAGAACT 1572
|||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| |
Sbjct 838 ATAGCTGCGAGCATATTTTGGTATGTATACCATCGTAGAAAAACAAAAAGTTACAGAAAT 897
Query 1573 TCTTCAGCATTGCTTCCAAGAAACATCTCATCAGATCCATCTTCAAAGTCTTTTGACGTT 1632
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 898 TCTTCAGCATTGCTTCCAAGAAACATCTCATCAGATCCATCTGCAAAGTCTTTTGACATC 957
Query 1633 GAGAAAGCAGAGGAACTATTAGTCGGAGTTCATCTTTTCTCTTACGAAGAGCTTGAAGAA 1692
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 958 GAGAAAGCAGAGGAATTATTAGTCGGAGTTCATATTTTCTCTTACGAAGAACTTGAAGAA 1017
Query 1693 GCCACTAATAACTTCGACCCATCTAAAGAACTCGGTGATGGAGGCTTTGGTACTGTTTAT 1752
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1018 GCCACTAATAACTTCGACCCATCTAAAGAACTCGGTGATGGAGGCTTTGGTACTGTCTAT 1077
Query 1753 TACGGCAAGCTTAAAGATGGAAGAAGCGTAGCTGTGAAACGGTTATACGATAACAACTTC 1812
||||| ||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 1078 TACGGTAAGCTTAAAGATGGACGAAGCGTAGCCGTTAAACGGTTATACGATAACAACTTC 1137
Query 1813 AAAAGAGCAGAGCAATTCAGGAACGAAGTTGAGATCTTAACGGGTTTACGTCATCCAAAC 1872
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1138 AAAAGAGCAGAGCAATTCAGGAATGAAGTTGAGATCTTAACGGGTTTACGCCATCCAAAC 1197
Query 1873 CTCGTGGCTCTCTTTGGATGCTCCTCAAAACAGAGCCGGGACTTACTGCTAGTGTATGAG 1932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CTCGTGGCTCTCTTTGGATGCTCCTCAAAACAGAGCCGGGACTTACTGCTAGTGTATGAG 1257
Query 1933 TATGTTGCAAACGGCACGTTAGCTGATCATCTACATGGTCCACAGGCTAACCCGAGCTCA 1992
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1258 TATGTTGCAAACGGCACGTTAGCTGATCATCTACATGGTCCACAGGCAAACCCTAGCTCA 1317
Query 1993 CTTCCTTGGTCTATTCGGCTCAAGATCGCTGTTGAAACTGCATCTGCCTTGAAGTATCTC 2052
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1318 CTTCCTTGGTCTATTCGGCTCAAAATCGCTGTTGAAACTGCCTCTGCCTTGAAGTATCTC 1377
Query 2053 CACGCCTCCAAGATCATCCACCGTGATGTTAAATCCAACAACATCCTTCTCGACCAGAAC 2112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1378 CACGCCTCCAAGATCATCCACCGTGATGTTAAATCCAACAACATCCTTCTCGACCAAAAC 1437
Query 2113 TTCAATGTCAAGGTTGCGGATTTTGGACTCTCTAGATTGTTTCCTATGGATAGAACGCAT 2172
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1438 TTCAATGTCAAGGTTGCGGATTTTGGACTCTCTAGACTGTTTCCTATGGATAAAACGCAC 1497
Query 2173 GTATCAACCGCTCCACAAGGAACTCCAGGCTACGTAGACCCGGATTACCACCTATGTTAT 2232
||||| |||||||||||||||||||| || || || ||||||||||||||| |||| |||
Sbjct 1498 GTATCTACCGCTCCACAAGGAACTCCGGGATATGTCGACCCGGATTACCACTTATGCTAT 1557
Query 2233 CAACTCTCCAACAAAAGCGACGTGTACAGCTTTGCAGTAGTGTTAATGGAGCTTATCTCT 2292
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1558 CAACTCTCAAACAAAAGCGACGTGTACAGCTTTGCGGTAGTGTTAATGGAGCTTATCTCT 1617
Query 2293 TCGCTTCCAGCAGTCGACATCACAAGACCGCGCCACGAGATCAACCTTTCAAACATGGCA 2352
|| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1618 TCACTTCCAGCAGTCGACATCACAAGACCGCGCCAAGAGATCAACCTCTCGAACATGGCA 1677
Query 2353 GTCGTTAAAATCCAGAATCACGAGCTCCGAGACATGGTGGATCCATCACTCGGGTTTGAC 2412
||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1678 GTCGTTAAAATCCAGAACCACGAGCTCCGCGACATGGTGGATCCGTCACTTGGGTTTGAC 1737
Query 2413 ACGGATACAAGAGTGAGACAGACGGTGATCGCAGTCGCTGAGCTGGCGTTCCAATGCTTA 2472
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1738 ACGGATACAAGAGTGAGACAGACGGTGATCGCTGTCGCTGAGCTGGCGTTCCAATGCTTG 1797
Query 2473 CAGTCGGATAAAGATCTTAGGCCATGTATGTCACACGTGCAGGATACGCTGACGAGGATA 2532
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1798 CAGTCGGATAAAGATCTTAGGCCATGTATGTCGCACGTGCAGGATACGTTGACGAGGATA 1857
Query 2533 CAGAACAATGGGTTTGGTTCGGAAATGGATGTTGTAGATGTGAACAAGAGTGGACCGTTG 2592
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 CAGAACAATGGATTTGGTTCGGAAATGGATGTTGTAGATGTGAACAAGAGTGGACCGTTG 1917
Query 2593 GTTGCACAGTCTCCTGATAGTGTCATTGTGAAATGGGACA-TAA 2635
|||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1918 GTTGCACAGTCTCCAGATAGTGTCATTGTGAAATGGGACAGTAA 1961
Score = 1101 bits (596), Expect = 0.0
Identities = 693/740 (94%), Gaps = 5/740 (1%)
Strand=Plus/Plus
Query 771 AGCAACTCAAACCTTCTCTCTTGATCCAAAGTTCAAGGCTTGTGAGCCGAAATCATGCGG 830
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGCAACTCAAACCCTCTCTCTTGATCCAAAGTTCAAGGCTTGTGAGCCGAAATCATGCGG 119
Query 831 CAGAGGTCCCGAGATCTCTTATCCATTCTATCTATCTGGAAAGCAAGAATCTTTTTGTGG 890
|| ||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 CAAAGGTCCCCAGATCTCCTATCCATTTTATCTATCTGGAAAGCAAGAATCTTTTTGTGG 179
Query 891 TTATCCAAGTTTTGAACTCGCTTGTGATTATGAACAAAAGCTCCCTGTTCTCGGGATCTC 950
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 180 TTATCCAAGTTTTGAACTCACTTGTGATGATGAAGAAAAGCTCCCTGTTCTCGGGATCTC 239
Query 951 TGGTGAGGAATACGTCATCAAGAACATATCGTACTTGACACAGTCATTTCAGGTCTTGAA 1010
||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||| ||||
Sbjct 240 CGGTGAGGAATATGTCATCAAGAACATATCTTACTTAACACAGTCGTTTCAGGTCGTGAA 299
Query 1011 CTCAAAGGCGTCTCATGATGATCCATGTCCCAGCCCTCTGCACAATCTTACCCTGCATAG 1070
||||||||| | || | |||||||||||||||| || ||| ||||||||||||| |||||
Sbjct 300 CTCAAAGGC-T-TC-TCATGATCCATGTCCCAGACCGCTGAACAATCTTACCCTCCATAG 356
Query 1071 GACTCCTTTCTTTGTGAACCCTTCTCATATCAACTTCTCCATACTTTACAATTGCTCCGA 1130
||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct 357 GACTCCTTTCTTTGTGAACCCTTCTCATATCAACTTCACTATACTTTACAATTGTTCCGA 416
Query 1131 TCACCTGCTGGAGGATATTAGGACATACCCTCTTACTTGTCCTGGCAACACGAGTCTTCT 1190
|||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||||
Sbjct 417 TCACCTGCTGGAGGATTTTAGGACATACCCTCTTACTTGTGCTCGAAACACGAGTCTTCT 476
Query 1191 TCAATCTGTTGGGATCTTTGACAGGAGGAAACTTGAAAAAGAGaaaaaaaTTGCATCCAT 1250
|| |||| ||||| |||||||||| | |||||||| |||||||||| |||||||||||||
Sbjct 477 TCGATCTTTTGGGGTCTTTGACAGAAAGAAACTTGGAAAAGAGAAACAAATTGCATCCAT 536
Query 1251 GTCGTGCCAGAAACTAGTCGATGTTCCTGTTTTAGCTAGTGACGAGTCTGATGTGATGGG 1310
|||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 537 GTCGTGCCAGAAACTAGTGGATGTTCCTGTTTTAGCTAGTAATGAGTCTGATGTGATGGG 596
Query 1311 TATGACTTATGTTGAGATTTTGAAGAGGGGTTTTGTTCTGAATTGGACTGCAAACAGTTG 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TATGACTTATGTTGAGATTTTGAAGAGGGGTTTTGTTCTGAATTGGACTGCAAACAGTTG 656
Query 1371 CTTCCGCTGCATCACCAGCGGCGGGAGATGTGGAACTGATCAACAAGAATTTGTTTGCTT 1430
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 657 CTTCCGCTGCATCACCAGCGGCGGGAGATGTGGAACTGATCAACAAGAATTCGTATGCTT 716
Query 1431 GTGTCCTGATGGACCTAAGA-TTCATGATACTTGCACGAATGGCAAAAATGGTAAAAGAA 1489
|||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 717 GTGTCCTGATGGACCTAA-ACTTCATGATACTTGCACGAATGGCAAAAATGATAAAAGAA 775
Query 1490 GAAGAGTGATGGTGAAAATT 1509
| |||||||| ||||| |||
Sbjct 776 GGAGAGTGATAGTGAAGATT 795
> AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 | chr1:6331398-6333743
FORWARD LENGTH=1016
Length=1016
Score = 1232 bits (667), Expect = 0.0
Identities = 758/799 (95%), Gaps = 17/799 (2%)
Strand=Plus/Plus
Query 2635 ATGGCAAATTTCGAGAATCTTTCTTCTGATTTTCAGACAATAGCCATGGATATATATTCG 2694
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 ATGGCAAATTTCGAGAATCTTTCTTCTGATTTTCAGACAATAGCCATGGATATATATTCT 126
Query 2695 TCCATAACTCAAGCTGCAGATCTAAACAACAACTATAGTAACCTTCATTTTCAAGCATTT 2754
||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||
Sbjct 127 TCCATAACTCAAGCTGCAGATCTAAACAACAACAACAGTAACCTTCATTTTCAAACATTT 186
Query 2755 CATCCTTCCTCTACTTCTCTCGACTCGCTCTTCCTTCATCACCACCAGCATCATCATCAA 2814
||||||||||||||||||||||| |||||||||| | | ||||||||||||
Sbjct 187 CATCCTTCCTCTACTTCTCTCGAATCGCTCTTCC-T--T---------CATCATCATCAA 234
Query 2815 CAACAATTACTTCGTTTTCCCGGAAACTCTCCAGACGACAATAGTAACAATTTCTCCTCA 2874
||||||||||||| ||||||||||||||||| | |||| ||||||||||||||| |||
Sbjct 235 CAACAATTACTTCACTTTCCCGGAAACTCTCC--A-GACAGTAGTAACAATTTCTCTTCA 291
Query 2875 ACTTCAAGTTTCCTCCATAGTGATCACAACAACGTCGATGA-ACCCAAGAAGAGAAAAGC 2933
||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 292 ACTTCAAGTTTCCTCCATAGTGATCACAACATCGTCGATGAGA-CCAAGAAGAGAAAAGC 350
Query 2934 TTTGTTACATACTATGTCTTCGTCGGAGAATAGTGGCGTCTCTGATAATACGAATGTTAT 2993
|||||||| |||| ||||||| || |||| ||| |||||||| |||||||||||||||||
Sbjct 351 TTTGTTACCTACTTTGTCTTCATCAGAGACTAGCGGCGTCTCCGATAATACGAATGTTAT 410
Query 2994 TACTACCGAAACCGGTTCTTTgagaagaggtaagaggttgaagaagaagaaggaagaaga 3053
| | || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TGCCACTGAAACAGGTTCTTTGAGAAGAGGTAAGAGGTTGAAGAAGAAGAAGGAAGAAGA 470
Query 3054 agacgagaaagagagagaagttgttcatgtgagagccagaagagGCCAAGCCACTGATAG 3113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGACGAGAAAGAGAGAGAAGTTGTTCATGTGAGAGCCAGAAGAGGCCAAGCCACTGATAG 530
Query 3114 CCACAGCTTAGCAGAACGGGTTCGGCGAGGGAAAATAAACGAGAGATTGAGATGCTTGCA 3173
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 531 CCACAGCTTAGCAGAACGGGTTCGGCGAGGGAAAATAAACGAGAGATTAAGATGCTTGCA 590
Query 3174 AGATATGGTTCCCGGATGTTATAAGGCTATGGGAATGGCTACGATGCTTGACGAGATAAT 3233
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 AGATATGGTGCCCGGATGTTATAAGGCTATGGGAATGGCTACGATGCTTGACGAGATAAT 650
Query 3234 TAATTATGTCCAGTCTCTACAGAATCAAGTCGAGTTCCTCTCGATGAAACTCACTGCAGC 3293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TAATTATGTCCAGTCTCTACAGAATCAAGTCGAGTTCCTCTCGATGAAACTCACTGCAGC 710
Query 3294 AAGTTCGTTTTATGACTTTAACTCAGAGACCGATGCAGTTGATTCCATGCAGAGAGCAAA 3353
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 711 AAGTTCGTTTTATGACTTTAACTCAGAGACAGATGCAGTTGATTCCATGCAGAGAGCAAA 770
Query 3354 GGCACGTGAGACAGTGGAGATGGGGAGACAAACAAGAGATGGGAGTCCTGTCTTCCATTT 3413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GGCACGTGAGACAGTGGAGATGGGGAGACAAACAAGAGATGGGAGTCCTGTCTTCCATTT 830
Query 3414 ATCAACATGGTCCCTTTGA 3432
|||||||||||||||||||
Sbjct 831 ATCAACATGGTCCCTTTGA 849
> AT1G18382.1 | Symbols: | other RNA | chr1:6326366-6326699 REVERSE
LENGTH=259
Length=259
Score = 137 bits (74), Expect = 6e-31
Identities = 179/227 (79%), Gaps = 17/227 (7%)
Strand=Plus/Minus
Query 518 AAAT-TGGAGACGTTCCGATGCTCAGATCTGTTAAGGACCATCTTCACATTCGGGGGT-C 575
|||| || ||| |||||||||| || |||| ||||||| | ||||| | | ||| |
Sbjct 239 AAATATGCAGAAATTCCGATGCTGAGGTCTGCTAAGGACGAGCTTCA-A--C---GGTCC 186
Query 576 AAATCTAACATTGGAGAAAGCTTTGAGAAAAGGATTCGATTTGAGTTAC--CGATTAAAA 633
|| ||||| || | | |||||||||||||||||||||||||||| ||| | || ||
Sbjct 185 GAA-CTAACTTTTGTGGAAGCTTTGAGAAAAGGATTCGATTTGAGGTACATC-ATGGAA- 129
Query 634 GATACATCTTGCCGGCGATGC-TCCAACTCCGGTGGGATTTGTGGTTCCGAC-TCAGGTT 691
|| | | |||||||| ||||| | | |||||||||||||||||||| | | | || ||
Sbjct 128 GACAAAGCTTGCCGGAGATGCATTGAT-TCCGGTGGGATTTGTGGTTCGG-CGTTAGATT 71
Query 692 CCGAGAGTTTCCGATGTCTATGTGAGGACAAACCTCACATCTCCTCC 738
| ||||||||||| |||||||||| ||||| |||||||| |||||||
Sbjct 70 CGGAGAGTTTCCGGTGTCTATGTGCGGACAGACCTCACAACTCCTCC 24
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 170818440915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5