BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312807
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18580.1 | Symbols: GAUT11 | galacturonosyltransferase 11 | ... 2567 0.0
AT1G74088.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 67.6 4e-10
> AT1G18580.1 | Symbols: GAUT11 | galacturonosyltransferase 11
| chr1:6395864-6398239 FORWARD LENGTH=2128
Length=2128
Score = 2567 bits (1390), Expect = 0.0
Identities = 1544/1619 (95%), Gaps = 7/1619 (0%)
Strand=Plus/Plus
Query 1 ATGAGGCGTTGGCAGCCGGTGGATCACCGGCGGCGAGGTAGAAGGAGATTGTCGAGTTGG 60
|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 ATGAGGCGGT-G--GCCGGTGGATCACCGGCGGCGAGGTAGAAGGAGATTGTCGAGTTGG 337
Query 61 ATATGGTTTCTCCTTGGTTCTTTCTCTGTCGCTGGATTAGTTCTCTTCATGGTTCAGCAT 120
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 338 ATATGGTTTCTCCTTGGTTCTTTCTCTGTCGCTGGTTTAGTTCTCTTCATCGTTCAGCAT 397
Query 121 TATCACCATCAACAAGATCCATCTCAGCTTTTAGTTGAGAGAGACACGAGAACTGAAATG 180
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 398 TATCACCATCAACAAGATCCATCCCAGCTTTTACTTGAGAGAGACACGAGAACCGAAATG 457
Query 181 GTATCCCCTACCCGTTTAAACTTCACAGAAGAGGTCACAAGTGCTTCCTCATTCTCTAGG 240
||||| ||| ||| |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 458 GTATCTCCTCCCCATTTAAACTTCACGGAAGAGGTCACAAGTGCTTCCTCCTTCTCTAGG 517
Query 241 CAGTTAGCAGAGCAAATGACACTTGCCAAGGCTTATGTTTTTATAGCTAAAGAGCACAAT 300
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 518 CAGTTAGCAGAGCAAATGACACTTGCCAAAGCTTATGTGTTTATAGCTAAAGAGCATAAT 577
Query 301 AATCTTCATTTAGCTTGGGAATTGAGTTCTAAGATCAGAAGTTGTCAGCTTCTGCTCTCG 360
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 578 AATCTTCATTTAGCTTGGGAATTGAGTTCTAAGATCAGAAGTTGTCAGCTTTTGCTTTCC 637
Query 361 AAAGCAGCAATGAGAGGACAACCTATTTCGTTAGATGAGTCAAAACCGATTATTAGTGGT 420
|||||||| ||||||||||||||||||||||| |||||| | ||||||||||||| ||||
Sbjct 638 AAAGCAGCTATGAGAGGACAACCTATTTCGTTTGATGAGGCTAAACCGATTATTACTGGT 697
Query 421 CTATCAGCTCTTATCTATAAGGCTCAAGATGCACATTACGACATAGCCACCACAATGATG 480
||||||||||||||||| |||||||||||||||||||| || || |||||||| ||||||
Sbjct 698 CTATCAGCTCTTATCTACAAGGCTCAAGATGCACATTATGATATTGCCACCACTATGATG 757
Query 481 ACCATGAAATCTCACATCCAAGCCCTTGAAGAACGTGCAAATGCAGCTACCGTTCAAACC 540
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct 758 ACCATGAAATCTCACATCCAAGCACTTGAAGAGCGTGCAAATGCAGCTACTGTTCAGACC 817
Query 541 ACAATCTTTGGGCAGTTGGTTGCTGAGGCACTACCAAAGAGCATCCACTGTCTGATTATA 600
||||| |||||||| ||||||||||||||| ||||||||||| |||||||| ||| |||
Sbjct 818 ACAATATTTGGGCAATTGGTTGCTGAGGCATTACCAAAGAGCCTCCACTGTTTGACGATA 877
Query 601 AAGCTCACATCTGATTGGTTAATAGAGCCATCTCGCCATGAACTAGCAGATGAAAACAGA 660
|||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 878 AAGCTCACATCTGATTGGGTAACAGAGCCATCTCGCCATGAACTGGCAGATGAGAACAGA 937
Query 661 AACTCACCTAGACTTGTCGACAACAACCTCTACCATTTCTGCATCTTCTCGGACAACGTT 720
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 938 AACTCACCTAGACTTGTCGACAACAACCTCTACCACTTCTGCATCTTCTCGGACAACGTG 997
Query 721 ATTGCCACCTCGGTTGTTGTTAATTCGACTGTCTCAAATGCTGATCACCCGAAA-CAGCT 779
|||||||||||||||||||||||||| |||||||| ||||||||||| || ||| |||||
Sbjct 998 ATTGCCACCTCGGTTGTTGTTAATTCAACTGTCTCGAATGCTGATCATCC-AAAGCAGCT 1056
Query 780 TGTTTTCCACATAGTGACGAATCGAGTGAGCTACAAAGCTATGCAGGCCTGGTTTCTGAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1057 TGTTTTCCACATAGTGACGAATCGAGTGAGCTACAAAGCTATGCAGGCCTGGTTTCTAAG 1116
Query 840 TAATGACTTCAAGGGCTCAGCTATAGAGATCAGGAGCATAGAGGAGTTTTCTTGGTTGAA 899
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1117 TAATGACTTCAAGGGCTCAGCAATAGAGATCAGGAGCGTAGAGGAGTTTTCTTGGTTGAA 1176
Query 900 TGCTTCGTATTCTCCTGTTGTTAAGCAACTGCTGGACACAGATGCAAGAGCTTACTATTT 959
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TGCTTCATATTCTCCTGTTGTTAAGCAACTGCTGGACACAGATGCAAGAGCTTACTATTT 1236
Query 960 CGGGGAACAGACAAGTCAAGATACGATTTCCGAGCCAAAAGTGAGGAACCCAAAGTACTT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 CGGGGAACAGACAAGTCAAGATACGATTTCCGAGCCAAAAGTGAGGAACCCAAAGTACTT 1296
Query 1020 GTCATTACTGAACCATCTCAGATTCTACATTCCTGAGATCTATCCGCAGCTAGAGAAGAT 1079
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1297 GTCATTACTGAACCATCTCAGATTCTACATTCCGGAGATCTATCCACAGCTAGAGAAGAT 1356
Query 1080 CATTTTCCTAGACGATGATGTTGTTGTTCAGAAAGATTTGACACCACTCTTCTCCTTGGA 1139
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1357 TGTTTTCCTAGACGATGATGTTGTTGTTCAGAAAGATTTGACTCCACTCTTCTCCTTGGA 1416
Query 1140 TCTGCACGGAAACGTCAATGGAGCTGTGGAAACATGTCTTGAAGCCTTTCACCGTTATTA 1199
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1417 TCTGCATGGAAACGTCAATGGAGCTGTGGAAACATGTCTTGAAGCCTTTCACCGATATTA 1476
Query 1200 CAAGTATCTAAATTTCTCGAACCCACTCATCAGCTCAAAGTTCGACCCACAAGCATGTGG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 CAAGTATCTAAATTTCTCGAACCCACTCATCAGCTCAAAGTTCGACCCACAAGCATGTGG 1536
Query 1260 ATGGGCGTTTGGTATGAACGTTTTTGATCTGATCGCTTGGAGGAAAGCGAACGTGACTGC 1319
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1537 ATGGGCTTTTGGTATGAACGTTTTTGATCTGATCGCTTGGAGGAATGCAAACGTGACTGC 1596
Query 1320 TCGGTACCATTACTGGCAAGAGCAGAACAGAGAACGAACGCTTTGGAAACTCGGGACACT 1379
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1597 TCGGTACCATTACTGGCAAGATCAGAACAGAGAACGAACGCTTTGGAAACTCGGGACACT 1656
Query 1380 CCCTCCAGGTCTACTGTCTTTCTATGGTCTCACAGAGCCACTGGATAGAAGATGGCATGT 1439
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1657 CCCTCCAGGTCTACTATCTTTCTATGGTCTCACAGAGCCACTGGACAGAAGATGGCATGT 1716
Query 1440 CTTGGGCTTAGGTTACGATGTGAACATCGATAACCGTCTGATAGAAACCGCAGCTGTGAT 1499
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1717 CTTGGGTTTAGGTTACGATGTGAACATCGATAACCGTCTGATCGAAACAGCAGCTGTGAT 1776
Query 1500 TCACTATAATGGTAACATGAAGCCTTGGCTAAAGCTGGGC-ATTGGTAGGTATAAACCTT 1558
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1777 TCACTATAATGGTAACATGAAGCCTTGGCTAAAGCTGG-CTATTGGTAGGTATAAACCTT 1835
Query 1559 TCTGGTTAAGGTTTTTGAACTCGAGCCATCCTTATTTACAAGATTGTGTCACAGCTTAA 1617
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836 TCTGGTTAAAGTTTTTGAACTCGAGCCATCCTTATTTACAAGATTGTGTCACAGCTTAA 1894
> AT1G74088.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is: galacturonosyltransferase
11 (TAIR:AT1G18580.1). | chr1:27861116-27862750
FORWARD LENGTH=666
Length=666
Score = 67.6 bits (36), Expect = 4e-10
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand=Plus/Plus
Query 457 TACGACATAGCCACCACAATGATGACCATGAAATCTCACATCCAAG 502
||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 210 TACAACCTAGCCACCACAATGATGACCATGAAATCTCACATC-AAG 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79869067095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5