BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312817
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18690.1 | Symbols: | Galactosyl transferase GMA12/MNN10 fa... 1666 0.0
AT1G74380.1 | Symbols: XXT5 | xyloglucan xylosyltransferase 5 |... 1101 0.0
> AT1G18690.1 | Symbols: | Galactosyl transferase GMA12/MNN10
family protein | chr1:6433574-6436922 FORWARD LENGTH=2272
Length=2272
Score = 1666 bits (902), Expect = 0.0
Identities = 1007/1059 (95%), Gaps = 2/1059 (0%)
Strand=Plus/Plus
Query 668 ACTTGAATGAGCCGCCTAAAGCTGAGGTTAGTCCCAATGCGGCGTACACTCTAGGGCCCA 727
||||| |||||||||||||||||| |||||||||||||| | || |||||||||||||
Sbjct 987 ACTTGCTTGAGCCGCCTAAAGCTGATATTAGTCCCAATGCGACATATACTCTAGGGCCCA 1046
Query 728 AAATCACCAACTGGGATAGTCAACGCAAGGTATGGCTGAATCAGAACCCTGAGTTTCCTA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 AAATCACCAACTGGGATAGTCAACGCAAGGTATGGCTGAATCAGAACCCTGAGTTTCCTA 1106
Query 788 GTATTGTCAATGGCAAAGCTCAAATATTGCTTCTCACTGGGTCTTCCCCGGGACCCTGCG 847
|||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
Sbjct 1107 ATATTGTCAATGGCAAAGCTCGAATATTGCTTCTCACAGGGTCTTCCCCCGGACCCTGTG 1166
Query 848 ATAAACCAATTGGAGACTATTATCTATTG-AAGTCCGTGAAGAACAAGATTGATTATTGT 906
|||||||||||||| |||||||||||||| ||| | |||||||||||||||||||| |||
Sbjct 1167 ATAAACCAATTGGAAACTATTATCTATTGAAAG-CTGTGAAGAACAAGATTGATTACTGT 1225
Query 907 AGACTCCACGGGATAGAGATTGTGTATAACATGGCGCATTTGGATGAGGAACTCTCAGGG 966
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1226 AGACTCCACGGGATAGAGATTGTGTATAACATGGCGAATTTGGATGAGGAACTCTCAGGG 1285
Query 967 TATTGGACGAAATTACCTATGATTAGGACATTAATGCTGTCTCATCCAGAAGTAGAATGG 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 TATTGGACGAAATTACCTATGATTAGGACATTAATGCTGTCTCATCCAGAAGTAGAATGG 1345
Query 1027 ATTTGGTGGATGGATAGTGATGCTTTGTTCACTGATATACTGTTTGAGATCCCGTTACCT 1086
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1346 ATTTGGTGGATGGATAGTGATGCTTTGTTCACTGATATACTGTTTGAGATCCCGTTGCCT 1405
Query 1087 CGGTATGAAAATCATAATCTGGTGATACACGGTTATCCGGACTTGCTGTTCAACCAAAAG 1146
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1406 CGGTACGAAAATCATAATCTGGTGATACACGGTTATCCAGACTTGCTGTTCAACCAAAAA 1465
Query 1147 TCTTGGATTGCATTAAACACGGGTATCTTTCTGTTGAGAAATTGTCAGTGGTCGTTAGAT 1206
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1466 TCATGGGTTGCATTGAACACGGGTATCTTTCTGTTGAGAAATTGTCAGTGGTCATTGGAT 1525
Query 1207 TTATTAGATGCTTGGGCCCCAATGGGACCAAAAGGGACGATCCGTGACGAAGCTGGGAAG 1266
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1526 TTATTAGATGCTTGGGCCCCAATGGGACCAAAAGGGAAGATCCGTGACGAAACTGGGAAG 1585
Query 1267 ATACTGACAGCTAATCTGAAAGGCAGGCCAGCATTTGAGGCTGATGATCAATCGGCGTTG 1326
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1586 ATACTGACAGCTTATCTGAAAGGCAGGCCAGCATTTGAGGCCGATGATCAATCGGCGTTG 1645
Query 1327 ATATATCTCTTGCTTTCGCAGAAGGATAAATGGATAGAGAAAGTTTATGTGGAGAATCAA 1386
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1646 ATATATCTCTTGCTTTCGCAGAAGGAAAAATGGATAGAGAAGGTTTATGTGGAGAATCAA 1705
Query 1387 TACTACTTGCACGGGTTTTGGGAAGGTTTGGTTGATAGGTATGAAGAGATGATAGAAAAG 1446
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1706 TACTACTTGCACGGGTTTTGGGAAGGTTTGGTTGACAGGTATGAAGAGATGATAGAGAAG 1765
Query 1447 TATCATCCAGGATTGGGAGATGAGAGATGGCCCTTTGTGACACATTTTGTGGGGTGCAAA 1506
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1766 TATCATCCAGGATTGGGCGATGAGAGATGGCCCTTTGTGACACATTTTGTAGGGTGCAAA 1825
Query 1507 CCGTGTGGCAGGTATGCTGATTATGCAGTGGATAGATGCTTCAAGAGCATGGAGAGGGCT 1566
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1826 CCGTGTGGCAGCTATGCTGATTACGCAGTCGATAGATGCTTCAAGAGCATGGAGAGGGCT 1885
Query 1567 TTTAATTTTGCAGATGATCAAGTGCTTAAGCTGTATGGGTTTAGCCACAGGGGATTGTTG 1626
||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1886 TTTAATTTTGCAGATAATCAAGTGCTGAAGCTGTATGGGTTTAGCCACAGGGGACTGTTG 1945
Query 1627 AGCCCCAAGGTTAAGAGGATCAGAAACGAGACAGTTTCTCCTTTGGAGTCAGTAGACAAG 1686
|| |||||| |||| ||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 1946 AGTCCCAAGATTAAAAGGATCAGAAATGAGACAGTCTCTCCTCTGGAGTCAGTAGACAAG 2005
Query 1687 TTTGATATGCGAAGAATGCGCGTGGAAACCAAACCATAG 1725
|||||||| |||||||||| | |||||||||||||||||
Sbjct 2006 TTTGATATTCGAAGAATGCACATGGAAACCAAACCATAG 2044
Score = 483 bits (261), Expect = 3e-135
Identities = 308/330 (93%), Gaps = 5/330 (2%)
Strand=Plus/Plus
Query 343 GATGGGT-ATAGATCCTCAGGAAGTGGCGGAGGACTATCGACAACTGCTGTATCAAACGG 401
||||||| | |||||||||||||||||| ||||||| |||||||| ||||||||||| ||
Sbjct 512 GATGGGTCA-AGATCCTCAGGAAGTGGCAGAGGACTGTCGACAACGGCTGTATCAAATGG 570
Query 402 TGGATGGAGAATCCGTGGTTTTTTGCGCGGTTGGCAGATCCAGAATACCTTATTTAACA- 460
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TGGATGGAGAACCCGTGGGTTTTTGCGCGGTTGGCAGATCCAGAATACCTTATTTAACAA 630
Query 461 --TCAAGATCATGATTCTCTGCGGCTTCGTGACCATTCTCATCCTACTTGGCACAATCAG 518
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 631 CATCAAGTTCATGATTCTCTGCTGCTTCGTGACCATTCTCATCCTACTTGGCACAATCCG 690
Query 519 TATTGGGAACTTTGGAAGCTCCAACGCCGACTCTGTTAATCGGAGTTTCATCAAGGAAAC 578
| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 691 TGTTGGGAACCTTGGAAGCTCCAACGCCGACTCTGTTAATCAGAGTTTCATCAAGGAAAC 750
Query 579 CATTCCGATTCTTGCGGAGATCCCATCTGATTCGCATTCGACGGACTTGGCTGAGCCGCC 638
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 751 CATTCCGATTCTCGCGGAGATCCCCTCTGATTCGCATTCGACGGACTTGGCTGAGCCTCC 810
Query 639 TAAAGCTGAGGTTAGTCCCAATGCGACGTA 668
||||||||| |||||||||||||| |||||
Sbjct 811 TAAAGCTGATGTTAGTCCCAATGCAACGTA 840
Score = 246 bits (133), Expect = 5e-64
Identities = 154/164 (94%), Gaps = 1/164 (1%)
Strand=Plus/Plus
Query 92 GTATACACTATGCCTTTAAGCTGTTAAGAAATCTCGTATATAGACAAGGGACTATGACGT 151
||||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 96 GTATAGACTACGCCTTTAAGCTGTTAAGAAATCTCGTATATAGAGAAGGGACTGTGACAC 155
Query 152 TTGGCAATGATGAAACAGCACATGTTATAGAGGAGCTTGAAAAAGAAAATGTTGTGAAAG 211
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 156 CTGGCAATGATGAAACAGCACATGTTATAGAGGAGCTTGAAAACGAAAATGTTGTGGAAG 215
Query 212 ATTTTGCAAATATAACTTCGCCTGCTGG-AAGTCGTTTCTTATG 254
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct 216 ATTTTGCAAATATAACTTCGCCTGCTGGGAAGTCGTTTCTTATG 259
Score = 69.4 bits (37), Expect = 1e-10
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 299 TTAGACTGTGTCCGGATTCAAGTGCCATCTGGAGGTCTCTCCC 341
|||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 422 TTAGACCGTGTCTGGATTCAAGTGCCATCTGGAGGTCTCTCCC 464
> AT1G74380.1 | Symbols: XXT5 | xyloglucan xylosyltransferase 5
| chr1:27959578-27961454 FORWARD LENGTH=1877
Length=1877
Score = 1101 bits (596), Expect = 0.0
Identities = 908/1061 (86%), Gaps = 12/1061 (1%)
Strand=Plus/Plus
Query 668 ACTTGAATGAGCCGCCTAAAGCTGAGGTTAGTCCCAATGCGGCGTACACTCTAGGGCCCA 727
||||| ||||||| | ||| ||| | | |||||||||| |||| |||||| || |
Sbjct 581 ACTTGGATGAGCCTCAGGAAGGTGATATGAATCCCAATGCGACGTATGTTCTAGGTCCTA 640
Query 728 AAATCACCAACTGGGATAGTCAACGCAAGGTATGGCTGAATCAGAACCCTGAGTTTCCTA 787
| ||||| | |||||||||||||| ||||||||| |||||||||| |||||||||||||
Sbjct 641 AGATCACGGATTGGGATAGTCAACGTAAGGTATGGTTGAATCAGAATCCTGAGTTTCCTA 700
Query 788 GTATTGTCAATGGCAAAGCTCAAATATTGCTTCTCACTGGGTCTTCC-CCGGGA-CCCTG 845
||| ||||||||||||||||| ||| |||||| | || || || ||| || | || ||
Sbjct 701 GTACTGTCAATGGCAAAGCTCGAATCTTGCTTTTAACAGGATC-TCCTCC-TAAGCCTTG 758
Query 846 CGATAAACCAATTGGAGACT-ATTATCTATTGAAGTCCGTGAAGAACAAGATTGATTATT 904
||||| || ||||| || | ||||||| ||||| || ||||||||||||||||||||||
Sbjct 759 TGATAACCCCATTGGTGA-TCATTATCTTTTGAAATCTGTGAAGAACAAGATTGATTATT 817
Query 905 GTAGACTCCACGGGATAGAGATTGTGTATAACATGGCGCATTTGGATGAGGAACTCTCAG 964
|||| || || || || |||||||||||||||||||| ||||||||| |||||||| | |
Sbjct 818 GTAGGCTTCATGGAATTGAGATTGTGTATAACATGGCTCATTTGGATAAGGAACTCGCTG 877
Query 965 GGTATTGGACGAAATTACCTATGATTAGGACATTAATGCTGTCTCATCCAGAAGTAGAAT 1024
| |||||| | |||||||| |||||||||| || ||| |||||||||||||||| || |
Sbjct 878 GCTATTGGGCAAAATTACCAATGATTAGGAGGTTGATGTTGTCTCATCCAGAAGTTGAGT 937
Query 1025 GGATTTGGTGGATGGATAGTGATGCTTTGTTCACTGATATACTGTTTGAGATCCCGTTAC 1084
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 938 GGATCTGGTGGATGGATAGTGATGCTTTGTTCACTGATATACTGTTTCAGATCCCTTTGG 997
Query 1085 CTCGGTATGAAAATCATAATCTGGTGATACACGGTTATCCGGACTTGCTGTTCAACCAAA 1144
|| ||||| | || |||||||| ||||| || ||||||||||||||| ||||| | || |
Sbjct 998 CTAGGTATCAGAAGCATAATCTAGTGATTCATGGTTATCCGGACTTGTTGTTCGATCAGA 1057
Query 1145 AGTCTTGGATTGCATTAAACACGGGTA-TCTTTCTGTTGAGAAATTGTCAGTGGTCGTTA 1203
|||| |||||||| || ||||| |||| | |||||| |||| |||||||||||||||||
Sbjct 1058 AGTCGTGGATTGCTTTGAACACAGGTAGT-TTTCTGCTGAGGAATTGTCAGTGGTCGTTG 1116
Query 1204 GATTTATTAGATGCTTGGGCCCCAATGGGACCAAAAGGGACGATCCGTGACGAAGCTGGG 1263
||||| |||||||||||||| || |||||||| |||||| | || ||||| || || |||
Sbjct 1117 GATTTGTTAGATGCTTGGGCGCCTATGGGACCTAAAGGGCCAATTCGTGATGAGGCCGGG 1176
Query 1264 AAGATACTGACAGCTAATCTGAAAGGCAGGCCAGCATTTGAGGCTGATGATCAATCGGCG 1323
||| || |||| ||| |||||||||| || ||||| |||||||| |||||||| || ||
Sbjct 1177 AAGGTATTGACGGCTTATCTGAAAGGTAGACCAGCTTTTGAGGCAGATGATCAGTCAGCA 1236
Query 1324 TTGATATATCTCTTGCTTTCGCAGAAGGATAAATGGATAGAGAAAGT-TTATGTGGAGAA 1382
||||| |||||| ||||||| ||||| |||| |||||| |||||||| || |||||||||
Sbjct 1237 TTGATCTATCTCCTGCTTTCTCAGAAAGATACATGGATGGAGAAAGTGTT-TGTGGAGAA 1295
Query 1383 TCAATACTACTTGCACGGGTTTTGGGAAGGTTTGGTTGATAGGTATGAAGAGATGATAGA 1442
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1296 TCAATACTATTTGCACGGGTTTTGGGAAGGTTTGGTTGATAGGTATGAGGAGATGATAGA 1355
Query 1443 AAAGTATCATCCAGGATTGGGAGATGAGAGATGGCCCTTTGTGACACATTTTGTGGGGTG 1502
|||||||| || |||||||| |||||||||||||| |||||||| ||||| || |||||
Sbjct 1356 GAAGTATCACCCGGGATTGGGTGATGAGAGATGGCCATTTGTGACCCATTTCGTTGGGTG 1415
Query 1503 CAAACCGTGTGGCAGGTATGCTGATTATGCAGTGGATAGATGCTTCAAGAGCATGGAGAG 1562
||||||||||| || ||||||||||||||||| || || ||||| ||||| ||||||||
Sbjct 1416 TAAACCGTGTGGTAGCTATGCTGATTATGCAGTCGAGAGGTGCTTGAAGAGTATGGAGAG 1475
Query 1563 GGCTTTTAATTTTGCAGATGATCAAGTGCTTAAGCTGTATGGGTTTAGCCACAGGGGATT 1622
||| |||||||||||||| |||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1476 GGCCTTTAATTTTGCAGACAATCAAGTGCTCAAGCTGTATGGTTTTAGCCATAGGGGATT 1535
Query 1623 GTTGAGCCCCAAGGTTAAGAGGATCAGAAACGAGACAGTTTCTCCTTTGGAGTCAGTAGA 1682
||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct 1536 GTTGAGCCCCAAGATTAAGAGGATCAGAAATGAGACAGTCTCTCCTTTGGAGTTTGTAGA 1595
Query 1683 CAAGTTTGATATGCGAAGAATGCGC-GTGGAAACCAAACCA 1722
|||||||||||| || |||| || | |||||||||||||||
Sbjct 1596 CAAGTTTGATATTCGCAGAACGC-CAGTGGAAACCAAACCA 1635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85290725955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5