BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312852
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19130.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 872 0.0
> AT1G19130.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF985 (InterPro:IPR009327), RmlC-like
jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to
1465 proteins in 584 species: Archae - 10; Bacteria - 1038;
Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes
- 304 (source: NCBI BLink). | chr1:6609325-6610613
REVERSE LENGTH=857
Length=857
Score = 872 bits (472), Expect = 0.0
Identities = 548/582 (94%), Gaps = 15/582 (3%)
Strand=Plus/Plus
Query 1 ATGGTGAAGTCTTCAGAAATCGTGGGAAAACTCAATCTCAGGGCTCACCAAGAAGGAGGC 60
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 71 ATGGTGAAGTCTTCAGAAATCGTCGGAAAACTTAATCTCAGGGCACACCAAGAAGGAGGC 130
Query 61 TTTTTCGCTGAAACTTTCAGAGATTCTTCTGTTTTCCTCTCCACCTCTCAGCTCCCACCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 131 TTTTTCGCTGAAACTTTCAGAGATTCTTCTGTTTTCCTCTCCACCTCTCAGCT--C-CC- 186
Query 121 ACCTTTAACTCTCTTCCTCTTAAGGTGGACAGAGCTGTGAGCACAAGTATCTACTTCTTG 180
|| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 187 TCC---AA-------CCT-TTAAGGTGGACAGAGCTGTGAGCACAAGTATCTACTTCTTG 235
Query 181 CTTCCATCTGGTAGCGTTTCTCGTCTTCATCGCATACCAATGGCTGAAACGTGGCACTTT 240
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 236 CTTCCATCTGGGAGCGTTTCTCGTCTTCATCGCATACCAATGGCTGAAACCTGGCACTTT 295
Query 241 TATTTGGGTGAACCCCTTACCGTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACA 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 296 TATTTGGGTGAACCCCTTACTGTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACA 355
Query 301 TGTCTTGGTCCTAACTTGCTAGAAGGTGATCAGAAGCCTCAGTACACGGTCCCTCCAAAC 360
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGTCTTGGTCCTGACTTGTTTGAAGGTGATCAGAAGCCTCAGTACACGGTCCCTCCAAAC 415
Query 361 GTCTGGTTTGGTTCGTTTCCTACAAAGGATGTTCATTTTTCTCAAGACGGGACTCTGCTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 416 GTCTGGTTTGGTTCGTTTCCTACAAAGGATGTTCATTTTTCTCAAGACGGGGCTCTGCTT 475
Query 421 AAAGCTGAGCCTAGAGACTCTGACAACCATTTCTCTCTTGTCGGCTGCACCTGCGCTCCC 480
||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 476 AAAGCTGAGGCTAGAGACTCTGAGAACCATTTCTCTCTTGTTGGCTGCACCTGCGCTCCT 535
Query 481 GCTTTCCAGTTCGAGGACTTTGAGCTCGCGAAACGCTCTGATCTCTTATCGCGGTTTCCT 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 536 GCTTTCCAGTTCGAGGACTTTGAGCTCGCGAAACGCTCTGATCTCTTATCAAGGTTTCCG 595
Query 541 CAACACGAGTCACTCATCACAATGCTATCTTACCCTGAGTGA 582
||||||||||||||||||||||||||||||||||| ||||||
Sbjct 596 CAACACGAGTCACTCATCACAATGCTATCTTACCCGGAGTGA 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5