BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312861
Length=2841
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19230.2 | Symbols: | Riboflavin synthase-like superfamily ... 3356 0.0
> AT1G19230.2 | Symbols: | Riboflavin synthase-like superfamily
protein | chr1:6644189-6649222 FORWARD LENGTH=2878
Length=2878
Score = 3356 bits (1817), Expect = 0.0
Identities = 1959/2025 (97%), Gaps = 19/2025 (1%)
Strand=Plus/Plus
Query 834 GGCTGATAGCAACGAAGATGGGAAGATCACTAGAGAAGAAATCAAAGAACTTTTGATGCT 893
||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 783 GGCTGATAGTAACGAAGACGGGAAGATCACTAGAGAAGAAATCAAAGAACTTCTAATGCT 842
Query 894 AAGTGCATCAGCAAACAAGTTAGCAAAACTCAAGGAACAAGCAGAAGAGTACGCATCTCT 953
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 843 AAGTGCATCAGCAAACAAGTTAGCAAAACTCAAGGAACAAGCTGAAGAGTACGCATCTCT 902
Query 954 GATCATGGAAGAACTTGATCCAGAGAATTTTGGATACATTGAGTTATGGCAACTCGAGAC 1013
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 903 GATCATGGAAGAGCTTGATCCTGAGAATTTTGGATACATTGAGTTATGGCAACTCGAGAC 962
Query 1014 ACTCTTACTTCAGAGAGACGCATACATGAATTACAGTAGACCGCTTAGCACAACAAGCGC 1073
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 963 ACTCTTACTTCAGAGAGACGCATACATGAATTACAGTAGACCACTTAGCACAACAAGCGG 1022
Query 1074 TGGAGTGAGTACACCAAGACGGAATCTAATCAGACCTCGTCATGTGGTTCGAAAA-TGTA 1132
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct 1023 TGGAGTAAGTACACCAAGACGGAATCTAATAAGACCTCGTCATGTGGTTC-AAAAGTGTA 1081
Query 1133 GaaaaaaaCTTCAGTGTCTGGTTCTAGATAACTGGCAAAGAAGCTGGGTTCTTTT-GCTG 1191
||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 1082 GAAAAAAACTTCAATGTCTGATTCTAGATAACTGGCAAAGAAGCTGGGTTCTTTTAG-TG 1140
Query 1192 TGGATCATGCTTATGGCCATCCTATTCGTCTGGAAGTTTCTTGAGTACAGAGAGAAAGCT 1251
||| ||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||
Sbjct 1141 TGGGTCATGCTTATGGCCATCCTCTTTGTCTGGAAGTTTCTAGAGTACAGAGAAAAAGCT 1200
Query 1252 GCGTTTAAGGTCATGGGGTATTGTTTAACCACTGCTAAAGGAGCTGCAGAGACTCTTAAG 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GCGTTTAAGGTCATGGGGTATTGTTTAACCACTGCTAAAGGAGCTGCAGAGACTCTTAAG 1260
Query 1312 CTCAATATGGCTCTGGTTTTATTACCTGTCTGCAGAAACACATTGACTTGGCTAAGATCT 1371
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1261 CTCAACATGGCTCTGGTTTTATTACCTGTCTGTAGAAACACATTGACTTGGCTAAGATCT 1320
Query 1372 ACACGCGCTCGAGCTTGTGTTCCTTTTGATGACAACATCAATTTCCATAAGATTATTGCT 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 ACACGCGCTCGAGCTTGTGTTCCTTTTGATGACAACATCAATTTCCATAAGATTATTGCT 1380
Query 1432 TGTGCCATAGCGATTGGGATACTTGTTCATGCTGGTACTCATTTGGCGTGTGATTTCCCC 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TGTGCCATAGCGATTGGGATACTTGTTCATGCTGGTACTCATTTGGCGTGTGATTTCCCC 1440
Query 1492 CGGATTATAAACTCGAGTCCAGAAGAATTCGCCTTGATTGCTTCTGCCTTCAATGGTACT 1551
|||||||||||||||||||||||| |||| | |||||| |||||||||||||||||||||
Sbjct 1441 CGGATTATAAACTCGAGTCCAGAACAATTTGTCTTGATCGCTTCTGCCTTCAATGGTACT 1500
Query 1552 AAGCCCACATTCAAAGACCTGATGACAGGTGCAGAAGGAATCACTGGGATCTCGATGGTG 1611
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1501 AAGCCTACATTCAAAGACCTGATGACAGGTGCAGAAGGAATCACCGGGATCTCGATGGTG 1560
Query 1612 ATCTTGACAACCATCGCATTCACATTAGCATCAACTCATTTCAGGAGAAACCGTGTGAGG 1671
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 ATCTTGACAACCATTGCATTCACATTAGCATCAACTCATTTCAGGAGAAACCGTGTGAGG 1620
Query 1672 CTTCCGGCACCACTTGATCGGTTGACTGGCTTTAACGCATTCTGGTACACTCATCACCTT 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CTTCCGGCACCACTTGATCGGTTGACTGGCTTTAACGCATTCTGGTACACTCATCACCTT 1680
Query 1732 CTAGTGGTTGTCTACATCATGCTCATTGTCCACGGTACCTTCCTGTTCTTTGCTGATAAG 1791
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1681 CTAGTGGTTGTCTACATCATGCTCATTGTCCACGGGACCTTCCTGTTCTTTGCTGATAAG 1740
Query 1792 TGGTATCAGAAAACTACTTGGATGTACATCTCGGTTCCTTTGGTGCTCTATGTGGCAGAA 1851
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1741 TGGTATCAGAAAACGACTTGGATGTACATCTCGGTTCCTTTGGTGCTCTACGTGGCAGAA 1800
Query 1852 CGAAGTCTGCGAGCTTGTAGGTCAAAGCATTACTCTGT-----T--TC----T----ATG 1896
|||||||||||||||||||||||||||||||||||||| | || | |||
Sbjct 1801 CGAAGTCTGCGAGCTTGTAGGTCAAAGCATTACTCTGTCAAAATCCTCAAGGTTTCCATG 1860
Query 1897 CTACCTGGAGAAGTACTCAGCTTAATCATGTCAAAGCCTCCTGGATTCAAGTACAAGAGC 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 CTACCTGGAGAAGTACTCAGCTTAATCATGTCAAAGCCTCCTGGATTCAAGTACAAGAGC 1920
Query 1957 GGTCAATACATATTCTTGCAGTGTCCAACTATCTCTCGATTTGAATGGCACCCATTTTCT 2016
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 GGTCAGTACATATTCTTGCAGTGTCCAACTATCTCTCGATTTGAATGGCACCCATTTTCT 1980
Query 2017 ATTACCTCTGCACCAGGAGATGACCAACTTAGTGTTCACATCCGAACACTCGGAGACTGG 2076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 ATTACCTCTGCACCAGGAGATGACCAACTTAGTGTTCACATCCGAACACTCGGAGACTGG 2040
Query 2077 ACAGAGGAGCTACGACGAGTTCTAACTGTGGGCAAAGATCTTTCAACATGCGTGATTGGG 2136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 ACAGAGGAGCTACGACGAGTTCTAACTGTGGGCAAAGATCTTTCAACATGCGTGATTGGG 2100
Query 2137 CGTTCAAAATTCTCTGCCTATTGCAATATTGATACAATAAACCGACCGAAATTACTAGTA 2196
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2101 CGTTCAAAATTCTCTGCCTATTGCAATATTGATATGATAAACCGACCAAAATTACTAGTA 2160
Query 2197 GACGGCCCATATGGAGCTCCAGCACAGGACTACAGAAGCTATGATGTCTTACTCCTCATT 2256
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2161 GACGGTCCATATGGAGCTCCAGCACAGGACTACAGAAGCTATGATGTCTTGCTCCTCATT 2220
Query 2257 GGATTGGGAATAGGAGCTACTCCTTTCATAAGTATCCTGAAGGATCTCCTGAACAATTCA 2316
||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2221 GGACTGGGAATAGGAGCTACTCCTTTCATAAGCATCCTGAAGGATCTGCTGAACAATTCA 2280
Query 2317 AGAGACGAACAAACAGACAATGAATTCAGCAGATCGGATTTCAGCTGGAATAGCTATACC 2376
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2281 AGAGACGAACAAACAGACAATGAATTCAGCAGATCGGATTTCAGCTGGAATAGCTGTACA 2340
Query 2377 TCTTCATATACCACAACAACCCCAACTTCAACACATGGAGGGAAAAAGAAAGCAGTGAAG 2436
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2341 TCTTCATATACCACAGCAACCCCAACTTCAACACATGGAGGGAAAAAGAAAGCAGTGAAG 2400
Query 2437 GCTCACTTTTACTGGGTCACAAGGGAGCCAGGATCCGTTGAATGGTTTAGAGGAGTAATG 2496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 GCTCACTTTTACTGGGTCACAAGGGAGCCAGGATCCGTTGAATGGTTTAGAGGAGTAATG 2460
Query 2497 GAAGAAATATCAGACATGGACTGCAGAGGCCAGATTGAGTTGCACAACTACCTTACAAGC 2556
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 GAGGAAATATCAGACATGGACTGCAGAGGCCAGATTGAGTTGCACAACTACCTTACAAGC 2520
Query 2557 GTATATGATGAAGGTGATGCAAGATCAACCCTGATAAAAATGGTTCAGGCTTTGAACCAT 2616
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2521 GTATATGATGAAGGTGATGCAAGATCAACCCTGATAAAAATGGTCCAGGCTTTGAACCAT 2580
Query 2617 GCCAAACATGGAGTTGATATTCTATCCGGAACACGGGTGAGAACACATTTTGCAAGGCCC 2676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2581 GCCAAACATGGAGTTGATATTCTATCCGGAACACGGGTGAGAACACATTTTGCAAGGCCC 2640
Query 2677 AACTGGAAGGAAGTCTTCAGTAGCATAGCAAGAAAGCATCCAAATTCGACAGTCGGCGTG 2736
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2641 AACTGGAAGGAAGTCTTCAGTAGCATAGCAAGAAAGCATCCAAATTCGACAGTCGGAGTG 2700
Query 2737 TTTTACTGCGGCATACCAACCGTGGCAAAGGAGTTGAAGAAGCAAGCACAAGACATGAGT 2796
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2701 TTTTACTGCGGCATACAAACCGTGGCAAAGGAGTTGAAGAAGCAAGCACAAGACATGAGT 2760
Query 2797 CAAAAAACAACCACACGGTTCGAATTCCATAAGGAGCATTTCTAA 2841
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2761 CAAAAAACAACCACACGGTTCGAGTTCCATAAGGAGCATTTCTAA 2805
Score = 1160 bits (628), Expect = 0.0
Identities = 734/785 (94%), Gaps = 7/785 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTTATCGCCTCTGAGTTTCTCTACGAGTTCGAGTTTCAGTCACGCCGATGGAATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTATCGCCTCTGAGTTTCTCTACGAGTTCGAGTTTCAGTCACGCCGATGGAATC 60
Query 61 GATGACGGTGTTGAGTTAAGATCATCTCCATTTGCCGGCGGCGCAATGCTGCCGGTTTTT 120
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACGACGGTGTTGAGTTAATATCATCTCCATTTGCCGGCGGCGCAATGCTGCCGGTTTTT 120
Query 121 CTCAACGGTTTGAGTCGTAACAGTGGAGAATCCGGAAG---TAGTAGCTGGGAAAGAGAG 177
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CTCAACGATTTGAGTCGTAACAGTGGAGAATCCGGAAGCGGTAGTAGCTGGGAAAGAGAG 180
Query 178 CTCGTGGAGGTGACGTTGGAGCTCGACGTCGGCGATGACTCCATACTCGTTTGCGGAATG 237
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CTCGTGGAGGTTACGTTAGAGCTCGACGTCGGCGATGACTCCATACTCGTCTGCGGAATG 240
Query 238 TCGGAGGCGGCGTCTGTTGATTCTCGGCCGAGATCGGTGGATTTAGTAACCGCGAGATTG 297
|| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct 241 TCTGAGGCGGCGTCTGTTGATTCTCGGGCGAGATCGGTGGATTTGGTAACCGCGAGGTTA 300
Query 298 TCGAGGAATCTATCGAATGCATCTACGAGAATCCGGCAGAAACTGGGGAAATTACTGAGG 357
||||||||| |||||||||| |||||||||||||| |||||||| ||||| |||||||||
Sbjct 301 TCGAGGAATTTATCGAATGCGTCTACGAGAATCCGCCAGAAACTAGGGAAGTTACTGAGG 360
Query 358 TCGGAGTCTTGGAAAACGACGACGTCTTCTACCGCCGGCGAGAGAGATAGAGATCTCGAA 417
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 TCGGAATCGTGGAAAACGACGACGTCTTCTACCGCCGGCGAGAGAGATAGAGATCTTGAA 420
Query 418 CGTCAGACGGCGGAGACTTCGGGAATTATGACGGCGAGGGATAAACGGAGAGAAAACGCG 477
||||||||||||| ||||| ||| ||| ||||||||||||||||||||| |||| |||||
Sbjct 421 CGTCAGACGGCGGTGACTTTGGGGATTCTGACGGCGAGGGATAAACGGAAAGAAGACGCG 480
Query 478 ATATTACAGCGATCAACGTCGAGTGCGCAAAGAGCGTTAAAAGGATTACAATTTATCAAT 537
| | |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 481 AAACTACAGCGATCAACGTCGAGTGCGCAAAGAGCGTTAAAAGGATTACAGTTTATAAAT 540
Query 538 AAAACCACGAGAGGAAACAGCTGCGACTGCGATTGGGATTGCAATTGCGATCAGATGTGG 597
||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||
Sbjct 541 AAAACCACGAGAGGAAATAGCTGCGTCTGCGATTGGGATTGCGATTGCGATCAGATGTGG 600
Query 598 AAAAAAGTTGAGAAA-CGATTCGAATCGCTTGCTAAAGAA-GGACTACTCGCGCGAGACG 655
||||||||||| ||| ||||||||||||||| ||||| || ||| ||||||| |||||||
Sbjct 601 AAAAAAGTTGA-AAAGCGATTCGAATCGCTTTCTAAA-AATGGATTACTCGCCCGAGACG 658
Query 656 ATTTTGGCGAGTGCGTTGGGATGGTGGATTCGAAGGAATTCGCGGTCAGTGTATTCGACG 715
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 659 ATTTTGGCGAGTGCGTTGGGATGGTGGATTCGAAGGACTTTGCGGTGAGTGTATTCGACG 718
Query 716 CTTTGGCTCGAAGAAGGAGACAGAAACTGGAGAAGATAACGAGAGATGAACTTCATGACT 775
| |||||| | ||||| ||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 719 CGTTGGCTAGGAGAAGAAGACAGAAACTGGAGAAGATAACGAAAGATGAACTTCATGATT 778
Query 776 TCTGG 780
|||||
Sbjct 779 TCTGG 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141169777602
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5